PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018040.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 251aa MW: 28029.6 Da PI: 6.3684

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018040.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.3	3.1e-55	70	173	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw +q i++++dfknh+lPlarikki+kadedv+misaeaPv++++ace+filelt+rsw+h+eenkrrtl+k+diaaa+trtdifdflvdi PCP018040.1 70 QLQKFWGEQhkeIDQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTMRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 167 89**9998889********************************************************************************* PP NF-YC 96 vprdel 101 vpr++l PCP018040.1 168 VPREDL 173 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MDQQGHGHPA TMGVAGTAAQ ASYGVNPYGS VGMMQSPTQP AGPSASSPLA QHQLAYQHIH 60 QQQQQQLQQQ LQKFWGEQHK EIDQTNDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA 120 RACEMFILEL TMRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS 180 IPRGGNLPVG GPSDGVPYYY MPPQHAPQVG APGMIVGKPA MDQNLYGQQT HPYIAQPTWP 240 HQQQQPHEDI E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	149	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	9e-80	NF-YC family protein