PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017953.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 475aa MW: 52466.7 Da PI: 6.9644

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017953.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.4e-07	219	240	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PCP017953.1 219 FCAICGKGFKRDANLRMHMRGH 240 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MRMEPSFKKF HQPSDLQTSH TCNSKNDTKI PDREGGKMHE AQQPNKIQDW DARTTLSNLT 60 FLEQKIHQLQ DLVHVIVGRR GQVLGRPDEL VAQQQQLITA DLTSIIAQLI STAGSLLPSV 120 KHTLSTTLPS TGQFGQFGGS FIPSAAGNDA GVKMQINSGS KLADQANQTD LISNYGTEHV 180 EEHETKDEED ADEGENLPPG SYEILQLEKE EILAPHTHFC AICGKGFKRD ANLRMHMRGH 240 GDEYKTAAAL AKPNKESSSE PTLIKRYSCP YAGCKRNKDH KKFQPLKTIL CIKNHYKRTH 300 CDKSYTCSRC NIKKFSVIAD LKTHEKHCGT DKWLCSCGTT FSRKDKLFGH ITLFQGHTPA 360 IPLDETKGPL GPADHGEGSE ASNRVGSINF SVSSTAPGGG GAAQNLMDVK ESIDDPTSYF 420 SPLNFETCNF DGFQEFPRLP FEDSESSFSF LMPGSCNYTH KTGGGESNFN NLPRQ

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MRMEPSFKKF HQPSDLQTSH TCNSKNDTKI PDREGGKMHE AQQPNKIQDW DARTTLSNLT  60
FLEQKIHQLQ DLVHVIVGRR GQVLGRPDEL VAQQQQLITA DLTSIIAQLI STAGSLLPSV  120
KHTLSTTLPS TGQFGQFGGS FIPSAAGNDA GVKMQINSGS KLADQANQTD LISNYGTEHV  180
EEHETKDEED ADEGENLPPG SYEILQLEKE EILAPHTHFC AICGKGFKRD ANLRMHMRGH  240
GDEYKTAAAL AKPNKESSSE PTLIKRYSCP YAGCKRNKDH KKFQPLKTIL CIKNHYKRTH  300
CDKSYTCSRC NIKKFSVIAD LKTHEKHCGT DKWLCSCGTT FSRKDKLFGH ITLFQGHTPA  360
IPLDETKGPL GPADHGEGSE ASNRVGSINF SVSSTAPGGG GAAQNLMDVK ESIDDPTSYF  420
SPLNFETCNF DGFQEFPRLP FEDSESSFSF LMPGSCNYTH KTGGGESNFN NLPRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein