PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017951.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 475aa    MW: 54186.6 Da    PI: 6.7098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017951.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.61.9e-92904701373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ Ll  A+av++++   a + L++l +++s  gd++qR++ayf+ +Laarl+   s  y+ +  ++ts    +ee+ a+++++ vsP+++f+h+ta
  PCP017951.1  90 LIHMLLITATAVNENNVGSALEHLTELYKIVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDMIMKEPTS----EEEFVAFTALYRVSPYYQFAHFTA 183
                  6899***************************************************9999**988887775....78899999**************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaI ea+e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s +el+et++rL++f + + ++ fef+ l    l +
  PCP017951.1 184 NQAIIEAFEKEqeknnRALHVIDFDVSYGFQWPSLIQSLSEKAssSNRISLRITGFGR----SVDELRETENRLTSFSKGFrNLFFEFQGL----LRS 273
                  *********9977777788***********************95444559********....9****************9757*******8....667 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr k++E++aVnlv++l +l  +++++++    +L+ v  l+P +v++veqe + +  sFl rf+e+l+y++a+fdsl+  lp es er ++E
  PCP017951.1 274 SKLINLRKKRNETIAVNLVFHLNTLS-NNLKISD----LLNSVHLLNPSIVILVEQEGSKSPRSFLSRFMETLHYFAAMFDSLDDCLPLESAERLSIE 366
                  77789*****************9997.5566655....************************************************************ PP

         GRAS 287 rellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg.......yrveee.sgslv.lgWkdr 365
                  +  lg+ei++++   +++     ++e+ e+W++++e+ GF+ ++ls+k + qa+lll+        +  +dg       ++v e+ +g  + lgW+dr
  PCP017951.1 367 KNHLGKEIKSMLNYDNNNdeNCPKTEKTETWKAKMESHGFEGINLSSKSEIQARLLLKirthysplE--FDGssgaaagFKVFERdDGRTIsLGWQDR 462
                  ************8765541267799*******************************97332222211..12222233336665543555557****** PP

         GRAS 366 pLvsvSaW 373
                   L+++SaW
  PCP017951.1 463 YLLTISAW 470
                  ******** PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MEDIDEEEEL LNLSLAIVTS SGRERFKKRK RSRDDGIANS ILVSPLNSYE GCEGKIFRLL  60
QMREQMLKKL DLHKKKGVAF DDEDGKGLHL IHMLLITATA VNENNVGSAL EHLTELYKIV  120
SLCGDSVQRV VAYFADGLAA RLLTRKSPFY DMIMKEPTSE EEFVAFTALY RVSPYYQFAH  180
FTANQAIIEA FEKEQEKNNR ALHVIDFDVS YGFQWPSLIQ SLSEKASSSN RISLRITGFG  240
RSVDELRETE NRLTSFSKGF RNLFFEFQGL LRSSKLINLR KKRNETIAVN LVFHLNTLSN  300
NLKISDLLNS VHLLNPSIVI LVEQEGSKSP RSFLSRFMET LHYFAAMFDS LDDCLPLESA  360
ERLSIEKNHL GKEIKSMLNY DNNNDENCPK TEKTETWKAK MESHGFEGIN LSSKSEIQAR  420
LLLKIRTHYS PLEFDGSSGA AAGFKVFERD DGRTISLGWQ DRYLLTISAW HCTVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.19e-57GRAS family protein