PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017425.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 704aa    MW: 79056.6 Da    PI: 7.6706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017425.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.31.8e-773296822364
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   + Ll++Ae v  +++e+a++lL + +  as + +++qR+++yfteAL++r+ + +++++yk  ++s+ s     ++l+++ +  +  P++ + +l a
  PCP017425.1 329 AHILLAAAEKVGYQQFERANRLLLHCEVDASFKVNNVQRVVFYFTEALRERIKKgTGNSMYKGNQMSTYSL-GLGTNLSFF-ACCQDIPFIPVMQLPA 424
                  699***************************************************88888888777777662.233333433.344556********** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   q Ile v+ e++vH iD++i  G+QW  L++ La+R+      l iT+vg    + k+++eetg+rLa++A++l++pf+f++ ++ ++ed++ + ++
  PCP017425.1 425 IQVILENVALENKVHLIDLEIRSGVQWTGLMEVLAKREeCHIELLTITAVGV---TGKQKIEETGRRLASVAKALNLPFQFKAAIVADMEDVKDQLFD 519
                  **************************************4445699*******...68**************************99************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++ +Ea++V   l l ++ +++ +le+    +++++++lsP v+vv+e ea+hns+sF++rf++al yysa+fdsle+ + +++++r+ +E   +++ 
  PCP017425.1 520 IEGDEAVVVYAPLILRTMISRPCCLEN----LMRVMRTLSPCVMVVIEVEANHNSPSFVNRFIDALFYYSAFFDSLETCM-KQENNRVLIEGL-FHEG 611
                  *******************99999999....***********************************************97.555667777765.**** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                  i+n+v +eg+er+ r  ++e Wr+ +e++ + +++ls+ +  qa+l+ +k++s   +++ + ++l+ gWk+
  PCP017425.1 612 IRNIVVAEGSERVVRSVKMEVWRAFFERFRMVEINLSNVVLFQASLVAKKYGSPACTLDRNGKCLTVGWKG 682
                  *********************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MGRQYNSEQS AKKLLINSTI FLKQPFHILT LTLLSLLLPL SFLLLSRLSC ANCLFSLSFP  60
TLIIPPPEPS NYDSSCIFYI FLYAATPFLY LLVSIVTIAA FIHSITGKII IITEFPSPIF  120
RPRLNTAWIF LCTLQVCVGL GIKGSIAAEV DGRATFGGVV DGKICLSSRA IFFLGLHETM  180
LHWCRFVVMP VMDDTIFGGA REEKWVERVA IAAGFGCLWW WRLSDEVESL VVVAIAKREL  240
AMGLGVADFV GCAFKKLRGD RLSNRCNEAE ASSYSIRQKL STEEIIRVAG ARYVQFSNQG  300
YGDFFMPLHP FGYALSGLFE EETKDVKLAH ILLAAAEKVG YQQFERANRL LLHCEVDASF  360
KVNNVQRVVF YFTEALRERI KKGTGNSMYK GNQMSTYSLG LGTNLSFFAC CQDIPFIPVM  420
QLPAIQVILE NVALENKVHL IDLEIRSGVQ WTGLMEVLAK REECHIELLT ITAVGVTGKQ  480
KIEETGRRLA SVAKALNLPF QFKAAIVADM EDVKDQLFDI EGDEAVVVYA PLILRTMISR  540
PCCLENLMRV MRTLSPCVMV VIEVEANHNS PSFVNRFIDA LFYYSAFFDS LETCMKQENN  600
RVLIEGLFHE GIRNIVVAEG SERVVRSVKM EVWRAFFERF RMVEINLSNV VLFQASLVAK  660
KYGSPACTLD RNGKCLTVGW KGILHKSGTL HELSITLCFL HNIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-50GRAS family protein