PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017278.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 774aa    MW: 85053.8 Da    PI: 7.9813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017278.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.33.7e-1014107732374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + +  + pp++ ++ + + ++ a+k+fsevsP+l+f ++t+N
  PCP017278.1 410 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDIIFKMGAYKVFSEVSPLLQFVNFTCN 505
                  679**************************************************955554..57888899999************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..elee 193
                  qa+lea++ ++++Hi+Dfdi+ G++W++++q+L  R+  +++pslRiT+++sp++++  el+ ++++L++fA+e+g++f+ +v+  ++l++   +l  
  PCP017278.1 506 QALLEALSDADQIHIVDFDIGFGAHWASFMQELPIRNrgASAPSLRITAFASPSTHHPVELRLMRDNLTQFANEIGISFDLEVVNIDSLDQNsySLPI 603
                  **********************************99966779*****************************************988877766114445 PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  +r + +Ea+aVn+ +   ++ +++++l++    vL++vk+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k+Er+ll+
  PCP017278.1 604 FRANDNEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLLQ 694
                  67777********99..666678999999....*********************************************665.579************* PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++i++ v  + +       ++  W+  + +aGF+pvp+s+++++qa++++++ + +g++ve++++slvl+W++r+L+s+SaWr
  PCP017278.1 695 PKIESTVLGRLRT----PDKMPFWKTLFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR 773
                  *******998887....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    
MPFQFQQGKG VIEIASASLP AIFTDSSCSK YKDGGFFNHH HHSFPTSEPN SVLHMRRSPS  60
PPTSASTLSS SFNNGGGGGD KSTPLAAETP PAVGPTRSPE IRPWAWRVGG LGDHALRNGG  120
VSGSRPVALR WIAGDVDDTS FGLKQLLQSG NNHHHHHHNS PLDFDGNAGL GVVDQGPNFD  180
LIGNGGVSDP NFGFGGSGFG NGSNKGSNGK LGFVPPGSGS FGLLNYKVSN VESMHNNGGS  240
NSVNCNIQNP IFSNSSNTLA LPVSLPAVYG QQQLSPDEKP QILSPQLFMS NQNQQPQVAQ  300
NPNFFMPLAY AQQEQHHLLQ SQSKRHNSGT NVDPSTHQIQ KGQFSDPGQE FFMRKQQQQQ  360
FGFAQGMQFL PQQHRIQQKP LMVPKQKVVL GNGEEMAHHQ QQQQLPHTLL DQLYKAAELV  420
GTGNFSHAQG ILARLNHQLS PVGKPLQRAA FYFKEALQLL LLMNNPATSP PPRTPTPFDI  480
IFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI VDFDIGFGAH WASFMQELPI  540
RNRGASAPSL RITAFASPST HHPVELRLMR DNLTQFANEI GISFDLEVVN IDSLDQNSYS  600
LPIFRANDNE AVAVNFPIWS TSNQPAALPN VLRFVKQLSP KIVVSLDRGC DRSDLPFPQH  660
ILQALQSYIN LLESLDAVNV TSDAVNKIER FLLQPKIEST VLGRLRTPDK MPFWKTLFAS  720
AGFTPVPFSN FTETQAECVV KRNPARGFHV EKRQESLVLC WQRRELISAS AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-120GRAS family protein