PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017264.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 764aa MW: 84819.3 Da PI: 4.8428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017264.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	20	63	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT Ed+ + +a +++ + +W++Ia +++ g+t+k++ +++ PCP017264.1 20 PWTRLEDKVFEQALVRFPEDlpdRWERIAGELP-GKTPKEVLEHY 63 8******************************.********9 PP
2	Myb_DNA-binding	44.6	3.2e-14	113	157	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky PCP017264.1 113 PWTEEEHKLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKY 157 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MFQETAPCWS SVVQSAASTP WTRLEDKVFE QALVRFPEDL PDRWERIAGE LPGKTPKEVL 60 EHYDDLVHDV LEIDSGRVNL PSYADESMVG WEDTASQITF GSNRETERKK GTPWTEEEHK 120 LFLIGLKKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QTSMKKERKR SSIHDITTVE 180 SNSVSVPADR NWIPPPAVPA HQSPLQHLTQ QSHLPDQGDL SGYQDFGYPM EKELVENSCG 240 LWHFEWDSAS AVLLVQKPWF GLGAIFGRIK SETRTNKNPS QRKSLGSHTG QQKTSGCSDG 300 NCIVWDFETR GIAKELRDRD CVAAITSVCW SKYGHRILVS AADKSLTLWD VVSGEKIMRT 360 ILQQTPLQAR LHPGSSSPSL CLACPLSSAP IIVDLNTGST VVLPVSIPDS NPGTVPPPRN 420 KISEGSPPFS PTAACFNKYG DLVYAGNSKG EILVIDYKSI QVRAMVPTSG VSVIKNIVFS 480 RNGQYLLTNS NDRTIRIYEN LLPLKDGLKT LDDINETLDG LDGVEKLKAV GSKCLTLFRE 540 FQDAITKMHW KAPCFSGDGE WVIGGSASKG EHKIYIWDRA GHLVKILEGP KEALIDLVWH 600 PVHPIVVSVS LTGLVYIWAK DYTENWSAFA PDFKELEENE EYVEREDEFD LIPETEKVKD 660 SDINEDDEVD IVTVEKDSAF SDSDISQEEL CFLPAIPSPD IPDPQDKCIE SSSKLVDSNS 720 GSPISEEGTP NGRAINHASS PLEVSNTPEM TMVDAARDDH SLAS

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MFQETAPCWS SVVQSAASTP WTRLEDKVFE QALVRFPEDL PDRWERIAGE LPGKTPKEVL  60
EHYDDLVHDV LEIDSGRVNL PSYADESMVG WEDTASQITF GSNRETERKK GTPWTEEEHK  120
LFLIGLKKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QTSMKKERKR SSIHDITTVE  180
SNSVSVPADR NWIPPPAVPA HQSPLQHLTQ QSHLPDQGDL SGYQDFGYPM EKELVENSCG  240
LWHFEWDSAS AVLLVQKPWF GLGAIFGRIK SETRTNKNPS QRKSLGSHTG QQKTSGCSDG  300
NCIVWDFETR GIAKELRDRD CVAAITSVCW SKYGHRILVS AADKSLTLWD VVSGEKIMRT  360
ILQQTPLQAR LHPGSSSPSL CLACPLSSAP IIVDLNTGST VVLPVSIPDS NPGTVPPPRN  420
KISEGSPPFS PTAACFNKYG DLVYAGNSKG EILVIDYKSI QVRAMVPTSG VSVIKNIVFS  480
RNGQYLLTNS NDRTIRIYEN LLPLKDGLKT LDDINETLDG LDGVEKLKAV GSKCLTLFRE  540
FQDAITKMHW KAPCFSGDGE WVIGGSASKG EHKIYIWDRA GHLVKILEGP KEALIDLVWH  600
PVHPIVVSVS LTGLVYIWAK DYTENWSAFA PDFKELEENE EYVEREDEFD LIPETEKVKD  660
SDINEDDEVD IVTVEKDSAF SDSDISQEEL CFLPAIPSPD IPDPQDKCIE SSSKLVDSNS  720
GSPISEEGTP NGRAINHASS PLEVSNTPEM TMVDAARDDH SLAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-64	MYB family protein