PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017162.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 526aa MW: 57535.1 Da PI: 8.4591

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017162.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PCP017162.1 87 FICEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.7	0.00039	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PCP017162.1 163 WKCDKCSKRYAVQSDWKAHSKTC 185 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MMLFHQQQSQ QLVDENISNL TSASGEAASV LSANRNEIGT RFSQQFFTTP PEAQPTLKKK 60 RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANHPHH LLISQQQPQM 240 NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ 300 DLSLHDSHND TSQNPNPSSL PPFQPAPSPH ISATALLQKA AQMGATMSSK NSTTAATTSE 360 AAATSAYPQP MVRAHQHNPG HVSDFAAAGA NATTGTTGPA VSSVHHHHQN QHQQASLLHD 420 MMNSLSSGTG FEGAAFELEP FGSIPNMLNN NAKKDSNNLT HFNVSGSDEG GANCGGNGEG 480 LTRDFLGLRS LSHSDILNIA GLGNCVNTAN APATTASRDY QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MMLFHQQQSQ QLVDENISNL TSASGEAASV LSANRNEIGT RFSQQFFTTP PEAQPTLKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANHPHH LLISQQQPQM  240
NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ  300
DLSLHDSHND TSQNPNPSSL PPFQPAPSPH ISATALLQKA AQMGATMSSK NSTTAATTSE  360
AAATSAYPQP MVRAHQHNPG HVSDFAAAGA NATTGTTGPA VSSVHHHHQN QHQQASLLHD  420
MMNSLSSGTG FEGAAFELEP FGSIPNMLNN NAKKDSNNLT HFNVSGSDEG GANCGGNGEG  480
LTRDFLGLRS LSHSDILNIA GLGNCVNTAN APATTASRDY QKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-122	C2H2 family protein