PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016766.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 1376aa MW: 153754 Da PI: 4.9635

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016766.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42	1.2e-13	1100	1140	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+ f kR++ + KKA ELS LCd++va+i++ + PCP016766.1 1100 IPNDSARKMAFRKRKKNVYKKADELSKLCDIDVALIVYEAD 1140 889**********************************9766 PP

Sequence ? help Back to Top
Protein Sequence Length: 1376 aa Download sequence
MFKKDLDDSS NMLSSWDGEG DCCNWTGVAC SNLTGHVCEL HLAGYYDEVT GEHRGLGGKV 60 NPSLLNLKHL NHLDLSFNNF EGLQIPSFLG SLKRLRYLDL SNAAFNGTIP HQLGNLSSLH 120 YLDLSSNSDL MVENLEWLSG LSLLKHLDMS DVDLTNASRW LQVNTLPYLL VELHFSDCKL 180 HHMPSGIVNL TNLKVLDLAN NDVNSTIPTW LYSSGNLESL YLSFNAFHGE ISSSLGNLTN 240 LVHLQLRGNE LEGEIPNSLG NLCLIPVSLR NLSRLQYLVI DHNSFEGVVS EAHFAHLTRL 300 KMFTANDNSL TLKTNYDWVP PFQLSTLSLG SWRLDPSELP TWLQSQNQLS VLNMSNTGIS 360 GTIPTWFWNI FSHDAENYVV LSSNQLSGEV PNIVSANWPK PKQDSDSFHM GLNFVIDLRS 420 NQFNGSLPLV SSAVSILDLS NSSFSGTLSH FFCDRSDVPK TLQVLYLDNN LLDGEIPDCL 480 LYWPYLTTVN LEDNNLTGKI PSSIGDLLTL RSLHLRNNSL SGELPVSLQN CEWLFLLDLA 540 GNKFVGGIPI WFGPSLAVLS LRSNKFHGFI PDELCSLTNL QILDLAYNNL SGTIPRCFQK 600 FSSMATTISS EKGTSIEDVY LSSYVIYIEN ADFVTKGREV KYDTVLRLVT SLDLSSNMIY 660 GEIPEELTSL IILQTLNLSN NLLTGRIPSK IGDMKMLESL DLSVNQLSGE ISPSISNLTF 720 LDYLNLSYNN MIGQIPISTQ LQSFDQSSYV GNKLCGPPLE ERCSINEAMP PSSRSLSTPQ 780 EADGIASTVS EKQDHFDSGL HDPKASSERK DNSNAKPYAS ETDAKRAKHY GTDTGAFNAL 840 YVAEGTEVSA ELEFLNQQNM ILSMENKALK QRLESIAQEQ LIKYCFGLFE SEAEKVIRLK 900 LSQVEQELLE REIGRLRALY QQQQQHQQQR PSSSHSRSNS RDLDSQFANL SLKHKDANAG 960 RDPAVGVGEW VVEGGLWRRT QCLFAHLSRL LVANAEYVAG NPQGSRRREG EGTKTSKDAA 1020 APGFQKRNFS LSHFYEAKKK KDDGPDDGDG DDDEDGDDDD DVNPKLQKQG NKQISEDKEI 1080 AEKIEQKKMV APTRRSLELI PNDSARKMAF RKRKKNVYKK ADELSKLCDI DVALIVYEAD 1140 QNKDIRPIQP ETWPQDPVEF NRILDRYKAS RDTAAPGFSK RNFDLSDFYE ARKKKDEKDE 1200 KDDNNGDNDD NDDGDDSDDD DDAHVDPELH KPGNKQISED KYPTWDPRID QFSQDELTIL 1260 IASLEAKIQA STLRIESMDR YTIYAEKQNR NLSRPESSSS KTPHHLKPAN FDVQKPHDVH 1320 KHPSQNPINT TTTTTTSTSA TQSKPPASVK CPMLPSAWIS ISESQKTPLR TSSSGG

Sequence ? help Back to Top

Protein Sequence Length: 1376 aa Download sequence

MFKKDLDDSS NMLSSWDGEG DCCNWTGVAC SNLTGHVCEL HLAGYYDEVT GEHRGLGGKV  60
NPSLLNLKHL NHLDLSFNNF EGLQIPSFLG SLKRLRYLDL SNAAFNGTIP HQLGNLSSLH  120
YLDLSSNSDL MVENLEWLSG LSLLKHLDMS DVDLTNASRW LQVNTLPYLL VELHFSDCKL  180
HHMPSGIVNL TNLKVLDLAN NDVNSTIPTW LYSSGNLESL YLSFNAFHGE ISSSLGNLTN  240
LVHLQLRGNE LEGEIPNSLG NLCLIPVSLR NLSRLQYLVI DHNSFEGVVS EAHFAHLTRL  300
KMFTANDNSL TLKTNYDWVP PFQLSTLSLG SWRLDPSELP TWLQSQNQLS VLNMSNTGIS  360
GTIPTWFWNI FSHDAENYVV LSSNQLSGEV PNIVSANWPK PKQDSDSFHM GLNFVIDLRS  420
NQFNGSLPLV SSAVSILDLS NSSFSGTLSH FFCDRSDVPK TLQVLYLDNN LLDGEIPDCL  480
LYWPYLTTVN LEDNNLTGKI PSSIGDLLTL RSLHLRNNSL SGELPVSLQN CEWLFLLDLA  540
GNKFVGGIPI WFGPSLAVLS LRSNKFHGFI PDELCSLTNL QILDLAYNNL SGTIPRCFQK  600
FSSMATTISS EKGTSIEDVY LSSYVIYIEN ADFVTKGREV KYDTVLRLVT SLDLSSNMIY  660
GEIPEELTSL IILQTLNLSN NLLTGRIPSK IGDMKMLESL DLSVNQLSGE ISPSISNLTF  720
LDYLNLSYNN MIGQIPISTQ LQSFDQSSYV GNKLCGPPLE ERCSINEAMP PSSRSLSTPQ  780
EADGIASTVS EKQDHFDSGL HDPKASSERK DNSNAKPYAS ETDAKRAKHY GTDTGAFNAL  840
YVAEGTEVSA ELEFLNQQNM ILSMENKALK QRLESIAQEQ LIKYCFGLFE SEAEKVIRLK  900
LSQVEQELLE REIGRLRALY QQQQQHQQQR PSSSHSRSNS RDLDSQFANL SLKHKDANAG  960
RDPAVGVGEW VVEGGLWRRT QCLFAHLSRL LVANAEYVAG NPQGSRRREG EGTKTSKDAA  1020
APGFQKRNFS LSHFYEAKKK KDDGPDDGDG DDDEDGDDDD DVNPKLQKQG NKQISEDKEI  1080
AEKIEQKKMV APTRRSLELI PNDSARKMAF RKRKKNVYKK ADELSKLCDI DVALIVYEAD  1140
QNKDIRPIQP ETWPQDPVEF NRILDRYKAS RDTAAPGFSK RNFDLSDFYE ARKKKDEKDE  1200
KDDNNGDNDD NDDGDDSDDD DDAHVDPELH KPGNKQISED KYPTWDPRID QFSQDELTIL  1260
IASLEAKIQA STLRIESMDR YTIYAEKQNR NLSRPESSSS KTPHHLKPAN FDVQKPHDVH  1320
KHPSQNPINT TTTTTTSTSA TQSKPPASVK CPMLPSAWIS ISESQKTPLR TSSSGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1111	1115	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.1	2e-30	bZIP family protein