PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016725.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 577aa    MW: 64252 Da    PI: 4.7316
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016725.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.73.6e-1402085772374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL+ecA a+s+g+ e+a++++++l++++s +gdp+qR+aay++e+Laar+a+s++ lyk+l+++e +   ss +laa+++++ev+P++kf++++aN
  PCP016725.1 208 KQLLFECAGALSEGNVEEASTMINELRQMVSIQGDPTQRIAAYMVEGLAARVASSGKFLYKSLKCKEPP---SSYRLAAMQILFEVCPCFKFGFMAAN 302
                  589*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea ++e+rvHiiDfdi+qG Q+++L+q+L+s p++pp+l++Tgv++pe++  +   l+ +g+rL+k+Ae+l+vpfef++ va+r++ +++++L 
  PCP016725.1 303 GAIIEACKNEKRVHIIDFDINQGNQYITLIQTLSSLPGKPPHLKLTGVDDPETVqrHVGGLKIIGQRLEKLAEALKVPFEFHA-VASRTSIVNTSMLG 399
                  ****************************************************99888999***********************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+fdsl+a lpres++r++vEr++l+r+
  PCP016725.1 400 CRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDMNTNTTPFLPRFVEAYNYYSAVFDSLDAALPRESQDRMNVERQCLARD 497
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s+++ ++++ l r+++++ y+v+ee g+l++gW++++L+++SaWr
  PCP016725.1 498 IVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTNVSDSIRDLSRQYSER-YKVKEEAGALLFGWEEKNLIVASAWR 577
                  ****************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MSLVRPAELS TSYRNPNFYS LRGSNESSSL STQIFGSDKP KVVYSDDPYS AESYEKYFLD  60
SPMEEVTHPS SSGVSGSSTN PQGASSYQLT AGSVSSLNTQ NPFSTSLMSN FESDYFESQS  120
PDADSFDEDK MRLKLQELER ALLNDNADED DGERNCSSQS MEVDGEWIDP IQNELLHDSP  180
KESLSSDSNA SSTSSNKEIS QVSPRTPKQL LFECAGALSE GNVEEASTMI NELRQMVSIQ  240
GDPTQRIAAY MVEGLAARVA SSGKFLYKSL KCKEPPSSYR LAAMQILFEV CPCFKFGFMA  300
ANGAIIEACK NEKRVHIIDF DINQGNQYIT LIQTLSSLPG KPPHLKLTGV DDPETVQRHV  360
GGLKIIGQRL EKLAEALKVP FEFHAVASRT SIVNTSMLGC RPGEALVVNF AFQLHHMPDE  420
SVSTVNQRDQ LLRMVKSLRP KLVTVVEQDM NTNTTPFLPR FVEAYNYYSA VFDSLDAALP  480
RESQDRMNVE RQCLARDIVN IVACEGEERI ERYEVAGKWR ARMTMAGFTS CPMSTNVSDS  540
IRDLSRQYSE RYKVKEEAGA LLFGWEEKNL IVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein