PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP016692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 732aa MW: 83301.4 Da PI: 7.1479 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ +++++G ++W++ +++ g++R++k+c++rw++yl PCP016692.1 15 RGPWTPEEDKRLLAYIQLHGHRSWSSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+ + PCP016692.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNAH 112 89********************.*********.***********976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 732 aa Download sequence |
MGKSSGYAPE SGIKRGPWTP EEDKRLLAYI QLHGHRSWSS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN AHLKKRLAKM 120 GFDPVTHKSK AAILASANGD PKMLSNLSHI AQWESARLQA EARFVKESFL RMPESAPAVS 180 LFDDYHQLAP PIVPQCLDML EASAWESLIS MSKSSSRSAA LTNDINGLDH HHVHDHGLNM 240 NGQDCGPNFQ RSQMSTYVTL DDSFAFDESH AMRAIWQDIR RQSRRHSLLC NADEKLSGAV 300 EHHGKTCVFG RHERIVDVLG IRSYSSIEEV KRGVRQYFFS LVCRFNEWNC AIWSSDGQAL 360 DTSDFIKDIV EKVTVRYKGE SFSKIDLPLL ESVASETEDH DGTVMTSKDF QTMFEGNKPR 420 LIQWPIHALN RVETFFYQLI AAYLDGVANT GMLELGELQL ATHFAERKPT GQPFFRNGMK 480 ESSQLIRSQI GLQQPYLVCL VFFTTQRRHW FEVESAPAIL ILKGSFNYSR FLNIMEQNKQ 540 QELPQLRSTT SMQLGCDARG YSRAGYDTVT WVEEKLSNEV ETRSADEEQS IAPAAEILQT 600 CGERTDMIDV PQLFIVRYKR NVTEEGEKPG KKPKTIWDAL QDQELDPASQ LVAKYHGSDD 660 TRERTRTPHL VPEDSEPMWT KVDEGETGLE TCLMKTYPLP SPIWNQEILM KCYCQVPIPS 720 SGDAASFPKV LK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-82 | MYB family protein |