PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016675.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 557aa    MW: 61252.5 Da    PI: 4.638
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016675.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.28.2e-311032182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XTTSEEEEE CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............kekiweFkh 83 
                   Fl+k+++++ed++l+ +isw ++g sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+Y  ++++++   s+                +++ weF++
   PCP016675.1 103 FLSKTFDLVEDPSLDPIISWGSSGGSFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYVGSSSEKNIFPSDYvlergvhllqgfrkvDPDKWEFAN 199
                   9**********************************************************8887777776645489999888877765449******* PP

                   SXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                   + F++g+++ll++i+r+ks
   PCP016675.1 200 EAFQRGQRHLLKRIQRRKS 218
                   *****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MDPKDGSHPN SPPISAGFDP ESIGLSAFRS EMPESLMGSQ SIPSSTSPLM EFEAFCSVNP  60
LGAFDFTERV SIPTSSMGGG DAEDVVAPPR PLECLQGTPV PPFLSKTFDL VEDPSLDPII  120
SWGSSGGSFV VWDPLEFSRL ILPRNFKHNN FSSFVRQLNT YVGSSSEKNI FPSDYVLERG  180
VHLLQGFRKV DPDKWEFANE AFQRGQRHLL KRIQRRKSPQ SLQIGSFIGP SAEEGKSGVE  240
GEIEMLRKER SVLMQELVEL QQQHRGTVDH MKVVNQRLQS AEKRQKQMFS FLAKMLQNPA  300
FVARLQIKTG KEDIGPSRVR RKFVKHQQHE LGKSDADMEG QIVKYQPAWR NRTTSSTALD  360
SNPVPFEQSP DYLSQVMTGK LGLGSVSTPF QFADPALDEL AATQGFLKTP EQEGEGASSM  420
ATEDPFFKGK SVLSPQQEAN PECYVSFQED LANEGTFPEL FSPGMESMIK QEDIWSMGFG  480
VSAGMSSSSH ELWGNPVNYD VPEMGVTGGL LDVWDIGPLQ EAGGSGIDKS PAHDSAFDEP  540
ESSAGQPKED ASKTTDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210216LKRIQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-88HSF family protein