PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP016603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 375aa MW: 40170.5 Da PI: 7.3886 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 51 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl PCP016603.1 51 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 98 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.5e-15 | 109 | 149 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PCP016603.1 109 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 149 89***************.*********.************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence |
MRNPSPSSKA AAAAASAKMQ TTITASSSSS KAAGVAGGTK TPCCAKVGLK RGPWTPEEDE 60 LLANYIKKEG EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIAPD EEDLILRLHR 120 LLGNRWSLIA GRIPGRTDNE IKNYWNTHLS KKLINQGIDP RTHKPLNPDH HSAADDADVD 180 NTNKSTAVAS SSKANDRFSN PNPSPPSDRL VHKEGDPNNS RNGGNIAIDD HDLGTIVHGY 240 ANMITSINNP DASSSATATG TLSLRSNNSH GGVLLGGGGN EEDDDINCCA DDVFSSFLNS 300 LINEDPFHGQ HQLQQVLQNG NVSAHAAAAG SENLPLITMT GASTTAPSTF GWESAVLMSS 360 AFIQNDHQRV NDPTE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-80 | MYB family protein |