PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016587.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 824aa MW: 93738 Da PI: 7.598

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016587.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +v ++G ++W++ ++ g+ R++k+c++rw +yl PCP016587.1 14 KGAWSPEEDSMLKAYVDKHGHKNWRALPKLAGLARCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.7	1e-16	68	111	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+ ++eE l++++++++G++ W+tIa++++ gRt++++k++w++y PCP016587.1 68 GNYSQEENNLIIKLHEEFGNK-WSTIAAKLP-GRTDNDIKNHWHTY 111 688****************.*****.**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence
MVRAPFYDKN GLKKGAWSPE EDSMLKAYVD KHGHKNWRAL PKLAGLARCG KSCRLRWMNY 60 LQPGLKQGNY SQEENNLIIK LHEEFGNKWS TIAAKLPGRT DNDIKNHWHT YFKKLTKQNS 120 TALSQTTEQS SDAPSVTSQN TELEAQSAPK HDNIGPQILE SSPLSPETFS SGHSSLSSNI 180 NHGHDQPIVS YFSAEDGTLA SSETILDKSS GDFWTEPFQP DNMMNDVQSE YYPITYLREE 240 GILSSPFVTF YDTHDDMDWF HQSSASYSRI IFTIRTLISC EYLYPFSLKL TRDMSNLNKL 300 DFFALKVSKR NYLKWVQDVK LHLTTKGIRA IIEASVANKP VDEAQKANAM IFIRRHIHNA 360 LQTEYFTEED PHTLWLALAY RFDHQKDIYL PEARHIGIIF DSRTLTTIQA QKFTKFLDLI 420 YVILVAELQN QLLIKNHQAQ PTGSNATPEA HATNFSSHKR RKIRRGRGNG RDNWSRVCQA 480 SPEAIAKYHS RRIDVEHSVP HGHTQNGLAE AFIKRIQLIA WTLVMRTKLP VSAWGYAILH 540 AAMLVRLKPT VTQPHSPLQS TKETLVTTSS NHDKILTLHE ASRECFWLRE VMEHIRITSD 600 LTSVVDLPTM IFEDNATSIE QLKKRYIKGD NTKHITLKFF SSHQQQQHQN IEVKQIHSQD 660 NLADLFTKSL PKFNFQKLVQ GIGSVGEMAP AISGVLIGPQ HVVYLRLLRE EDENPYTVMV 720 PRVDSDLLPF VIKASLVSND TISGARGLNE ASPSHSVEGL VDDNDTTSEQ VSDSQNDSPI 780 RGVQNLVEEL YILHSVGFHE RPTKAPKVIE VSSFMDVLQR LQNY

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence

MVRAPFYDKN GLKKGAWSPE EDSMLKAYVD KHGHKNWRAL PKLAGLARCG KSCRLRWMNY  60
LQPGLKQGNY SQEENNLIIK LHEEFGNKWS TIAAKLPGRT DNDIKNHWHT YFKKLTKQNS  120
TALSQTTEQS SDAPSVTSQN TELEAQSAPK HDNIGPQILE SSPLSPETFS SGHSSLSSNI  180
NHGHDQPIVS YFSAEDGTLA SSETILDKSS GDFWTEPFQP DNMMNDVQSE YYPITYLREE  240
GILSSPFVTF YDTHDDMDWF HQSSASYSRI IFTIRTLISC EYLYPFSLKL TRDMSNLNKL  300
DFFALKVSKR NYLKWVQDVK LHLTTKGIRA IIEASVANKP VDEAQKANAM IFIRRHIHNA  360
LQTEYFTEED PHTLWLALAY RFDHQKDIYL PEARHIGIIF DSRTLTTIQA QKFTKFLDLI  420
YVILVAELQN QLLIKNHQAQ PTGSNATPEA HATNFSSHKR RKIRRGRGNG RDNWSRVCQA  480
SPEAIAKYHS RRIDVEHSVP HGHTQNGLAE AFIKRIQLIA WTLVMRTKLP VSAWGYAILH  540
AAMLVRLKPT VTQPHSPLQS TKETLVTTSS NHDKILTLHE ASRECFWLRE VMEHIRITSD  600
LTSVVDLPTM IFEDNATSIE QLKKRYIKGD NTKHITLKFF SSHQQQQHQN IEVKQIHSQD  660
NLADLFTKSL PKFNFQKLVQ GIGSVGEMAP AISGVLIGPQ HVVYLRLLRE EDENPYTVMV  720
PRVDSDLLPF VIKASLVSND TISGARGLNE ASPSHSVEGL VDDNDTTSEQ VSDSQNDSPI  780
RGVQNLVEEL YILHSVGFHE RPTKAPKVIE VSSFMDVLQR LQNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	6e-53	MYB family protein