PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016586.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 258aa MW: 29523.7 Da PI: 5.813

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016586.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl PCP016586.1 14 KGTWTPDEDRKLIAYVTRYGYWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	58.1	2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e +v+++++lG++ W++Ia+ ++ gRt++++k++w++ PCP016586.1 67 RGNYSKEEEETIVKLHEKLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MVRTPCRDEN GMKKGTWTPD EDRKLIAYVT RYGYWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY SKEEEETIVK LHEKLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRTNNKQ 120 CNSSFSSSAT NTEETPSYSS LEAAVDQPIK KAIFPNTEST VTSQVTQKTD DRVDNSSQLS 180 PSPQPSSSEV SSMSADNNWV NYVEDINATS MEAFADSQFI DDFWTEPFLA DNSYIPSGFY 240 TPLMDSEFVY PLFGGDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-60	MYB family protein