PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016513.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 482aa MW: 52852.8 Da PI: 8.2348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016513.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.7e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PCP016513.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	15.3	5.7e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PCP016513.1 140 WVCDKCSKGYAVQSDYKAHLKTC 162 58*******************98 PP
3	zf-C2H2	10.8	0.0015	170	188	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ PCP016513.1 170 DCGRVFSRVESFIEHQDTC 188 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MFDNTNNNNT AAFSSAPPSS SSHENGGATH KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RELAEDQVIK KRVFVCPEPS CLHHDPSHAL 120 GDLVGIKKHF RRKHSNHKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES 180 FIEHQDTCTV RHVVLPELQA ALQPAACSSR TASSTSPSSD TNFSISNNVA APVVLAGLPV 240 RPNPTDHHDQ RDGMNAYISC NRQQQQQQQQ VHKNILELQL LPSSNAHTSS PPNLDKGYAT 300 NLKLSIGSPS SDQLDNEKNE SSKYNSSHII RRRSSPGDEN ESALGGVGPA SDVARLKEFA 360 SEELKLAVAE KSYAEDARRE AKRQIEMAEI EFANAKRIRQ QAQAEVEKAQ LLKEQATKRI 420 SSAILQITCQ ACKQHFHIAS AASAAAGGGA LGGVGPSDET SLAMSYMSSA TTEGEGDHDH 480 TT

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MFDNTNNNNT AAFSSAPPSS SSHENGGATH KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RELAEDQVIK KRVFVCPEPS CLHHDPSHAL  120
GDLVGIKKHF RRKHSNHKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDTCTV RHVVLPELQA ALQPAACSSR TASSTSPSSD TNFSISNNVA APVVLAGLPV  240
RPNPTDHHDQ RDGMNAYISC NRQQQQQQQQ VHKNILELQL LPSSNAHTSS PPNLDKGYAT  300
NLKLSIGSPS SDQLDNEKNE SSKYNSSHII RRRSSPGDEN ESALGGVGPA SDVARLKEFA  360
SEELKLAVAE KSYAEDARRE AKRQIEMAEI EFANAKRIRQ QAQAEVEKAQ LLKEQATKRI  420
SSAILQITCQ ACKQHFHIAS AASAAAGGGA LGGVGPSDET SLAMSYMSSA TTEGEGDHDH  480
TT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-110	C2H2 family protein