PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016418.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 833aa MW: 92356.3 Da PI: 6.3978

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016418.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT++Ede+l+ +++ G g+W++ ++ g+ R++k+c++rw +yl PCP016418.1 14 KGRWTADEDEILLSYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.4	1.9e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l PCP016418.1 67 RGNISSQEEDVIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence
MGRAPCCEKV GLKKGRWTAD EDEILLSYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SSQEEDVIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR 120 RHTTTIAITT EISTSSLPAG HEVSAAMELG PPPPKRRRGR TSRWAMKKNK TYLTTKPKGL 180 EAPLSQSHHK DVDVSADADD DRLNNVHKAT SLPTENNNKT VDTMQDDYVL LIEAPDQQQE 240 TGGGGISMMA TVIDHQKESD GGKLILGPHP LVHDDGDMNE SVGIDGGLLG FTDYLMDDIN 300 EDEILDPNGV LALSASEINI HQDADHFTDA DHHQDTELPS SCDQLVMCPN KIMMTTTTTT 360 TTAASDDHHD QEQESRSCGG NLSSLSISNS NGQVVTGDLH SCGSSMSLTN ASNYDMEDGH 420 TAGGFGTYDH TLWDWESVLI QARTEHDYLW DGHDRQNMLS LLREGESATA AGDDDHADAM 480 RKDFYCEEML SIVRPLKGCS TGQFEMLLVS FGMSQIRKPK FKELVTRLAF SAAAGGGRHH 540 CWLRSAEGVG MLRLKPNRIG AFTTTGEELF VSFAAKLLRC HATIDFSFNP LSARNRALSC 600 ITTFPRSFHS STSEDDTFSE LGSPVPKAPT HARKLKLMTE KPEPYLKTNR TKRPSRMPSE 660 SRIRLKDNSS KLGSDWEAVV QSFGRSIDPP EEEEEVTIRI TNINSETTDS AVHSMCTSCG 720 SLEGLVRTKE DAVDALFSVK NKAGIKRIIK KLNETMVNGH KWSADLHGRD SSAEVRSKQS 780 NANHDLRLEI SRQLADVRRE VTRKTVCIQD LECLHNALLH IEGEAHPHTT HTH

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence

MGRAPCCEKV GLKKGRWTAD EDEILLSYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSQEEDVIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR  120
RHTTTIAITT EISTSSLPAG HEVSAAMELG PPPPKRRRGR TSRWAMKKNK TYLTTKPKGL  180
EAPLSQSHHK DVDVSADADD DRLNNVHKAT SLPTENNNKT VDTMQDDYVL LIEAPDQQQE  240
TGGGGISMMA TVIDHQKESD GGKLILGPHP LVHDDGDMNE SVGIDGGLLG FTDYLMDDIN  300
EDEILDPNGV LALSASEINI HQDADHFTDA DHHQDTELPS SCDQLVMCPN KIMMTTTTTT  360
TTAASDDHHD QEQESRSCGG NLSSLSISNS NGQVVTGDLH SCGSSMSLTN ASNYDMEDGH  420
TAGGFGTYDH TLWDWESVLI QARTEHDYLW DGHDRQNMLS LLREGESATA AGDDDHADAM  480
RKDFYCEEML SIVRPLKGCS TGQFEMLLVS FGMSQIRKPK FKELVTRLAF SAAAGGGRHH  540
CWLRSAEGVG MLRLKPNRIG AFTTTGEELF VSFAAKLLRC HATIDFSFNP LSARNRALSC  600
ITTFPRSFHS STSEDDTFSE LGSPVPKAPT HARKLKLMTE KPEPYLKTNR TKRPSRMPSE  660
SRIRLKDNSS KLGSDWEAVV QSFGRSIDPP EEEEEVTIRI TNINSETTDS AVHSMCTSCG  720
SLEGLVRTKE DAVDALFSVK NKAGIKRIIK KLNETMVNGH KWSADLHGRD SSAEVRSKQS  780
NANHDLRLEI SRQLADVRRE VTRKTVCIQD LECLHNALLH IEGEAHPHTT HTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	5e-68	MYB family protein