PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016392.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 581aa MW: 62521.1 Da PI: 8.7612

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016392.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.4	3e-24	206	250	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e PCP016392.1 206 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEG 250 79****************************************985 PP
2	QLQ	60.7	4.2e-21	136	172	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P+ Ll++i+k PCP016392.1 136 GPFTPSQWMELEHQALIYKYITANMPIPSTLLVPIKK 172 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MDLGVVGFGG LGGGCSSDSG FPLAATSSAD QEAAKHKWLY GSGYHRQWRS ADEEDWRSSK 60 LAKTDDFSSS KAMQQQQSLS FSNSPNPEAV LVEKNAAMPY FHQALPAYNR TSAGHNSGSL 120 SNGAAAMHWS TAGGRGPFTP SQWMELEHQA LIYKYITANM PIPSTLLVPI KKALDSAGFS 180 TFPNGLLRPN SLGWGSIHLG FSNNTDPEPG RCRRTDGKKW RCWRDAVPDQ KYCERHMNRG 240 RHRSRKPVEG QTGHTGTTTS KQPLASSSST SVVSIPGGDG GGSSHAIANQ QLKSLPQPAA 300 ANSSAAATQM NRMFMNKESA GGRIQHTPGL TMLSKENPFS TQKQQIGCEE SSRTEFGLVS 360 SDSLLNPSQK RSYPAETNSQ QHSLRHFIDD WPKTQSDRQP VSWPNQLGMQ SDRTQLSISI 420 PIASSTSSEK LTLSPLRLSR ELESPVPTGL GTDSSHILNE QNNMKQANWI PIAWETSLGG 480 PLGEVLHNPN SNTNAVEYKN NSSVLNLMTG GSWDNNNNSP SSLGSSPTGV LQKTAFGSLS 540 NSSAGSSPRA ENNNKSHEGF SSLCNDLLGS NMLNSSSLPA L

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MDLGVVGFGG LGGGCSSDSG FPLAATSSAD QEAAKHKWLY GSGYHRQWRS ADEEDWRSSK  60
LAKTDDFSSS KAMQQQQSLS FSNSPNPEAV LVEKNAAMPY FHQALPAYNR TSAGHNSGSL  120
SNGAAAMHWS TAGGRGPFTP SQWMELEHQA LIYKYITANM PIPSTLLVPI KKALDSAGFS  180
TFPNGLLRPN SLGWGSIHLG FSNNTDPEPG RCRRTDGKKW RCWRDAVPDQ KYCERHMNRG  240
RHRSRKPVEG QTGHTGTTTS KQPLASSSST SVVSIPGGDG GGSSHAIANQ QLKSLPQPAA  300
ANSSAAATQM NRMFMNKESA GGRIQHTPGL TMLSKENPFS TQKQQIGCEE SSRTEFGLVS  360
SDSLLNPSQK RSYPAETNSQ QHSLRHFIDD WPKTQSDRQP VSWPNQLGMQ SDRTQLSISI  420
PIASSTSSEK LTLSPLRLSR ELESPVPTGL GTDSSHILNE QNNMKQANWI PIAWETSLGG  480
PLGEVLHNPN SNTNAVEYKN NSSVLNLMTG GSWDNNNNSP SSLGSSPTGV LQKTAFGSLS  540
NSSAGSSPRA ENNNKSHEGF SSLCNDLLGS NMLNSSSLPA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-73	GRF family protein