PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015728.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 241aa    MW: 25814.6 Da    PI: 8.8206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015728.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004290112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k Fs+   L  H  +H
  PCP015728.1  90 YKCSVCNKGFSSYQALGGHKASH 112
                  9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MALEALKSAS TTTTPSPSFS SFEKVEDRRH GNHQIHSKEP WAKRKRSKRP RSEDPPTEEE  60
YLALCLIMLA RGTTDSSELP PQPPSRDLSY KCSVCNKGFS SYQALGGHKA SHRKSDSSAA  120
AMVDQQIAAA SAVTTTSGRT HECSICHKTF PTGQALGGHK RCHYDGGSAA TSAVTTSEGG  180
GAGASSHSQS HQSQRGFDLN MPALPEFWPG FGGDKKSQLS GEQEVQSPMV GKKPRWLLGG  240
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-50C2H2 family protein