PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015651.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 419aa    MW: 46982.7 Da    PI: 5.4275
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015651.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.41.8e-9124162373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ++lL++cA+a++++d++l+q++L+ l+++a +dgd++qRl+  f++AL ar ar  + ++ +a++ s+++ + +++++++ +l  f +++P+++f++ 
  PCP015651.1   2 EQLLVHCANAIETNDATLTQQILWVLNNIAPQDGDSNQRLTCAFLRALIARAARiGSCKVLAAMANSRANFTIHTHKFSVIELasFIDLTPWHRFGFT 99 
                  79****************************************************4333555555555555555666667766688************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....... 181
                  +aN aIleaveg + vHi+D+++++++Q p+L +a+asR+    +pp l++T+ g  e        ++ee+g +L +fA++ ++ +ef+v+       
  PCP015651.1 100 AANAAILEAVEGYSVVHIVDLSLTHCMQIPTLVDAIASRQdgnVSPPLLKLTVAGTTEDIppmLDLSYEELGFKLVNFARSRNIILEFRVIpssytdg 197
                  ****************************************655569**********776698888999***********************8885555 PP

         GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrll............................desvsleserdevLklvkslsPkvvvvveqeadhns 250
                   a+ +++l++++L   + gEal+Vn++++lh+++                            ++s +++s r+ +Lk++++l P++vv+v+++ad++s
  PCP015651.1 198 FANLIQQLRVQNLVYAEsGEALVVNCHMMLHYIPeetstlplinpnpsssrstssyafdvelSSSSTTPSLRTMFLKALRGLDPTIVVLVDEDADLTS 295
                  555555556666655559******************************************99999999999*************************** PP

         GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                  ++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a eg++r+er e + +W +r+++a F++v ++e+a++++k++l +++  g
  PCP015651.1 296 NNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-VCWKIENVIAYEGFQRVERLEPKCRWVQRMRNANFRSVLFGEDAVSEVKAMLDEHA-AG 391
                  **************************************.99******************************************************.89 PP

         GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
                  + ++ e++ +vl+Wk++++v+++aW
  PCP015651.1 392 WGLKREEEDVVLTWKGHNVVFATAW 416
                  99*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MEQLLVHCAN AIETNDATLT QQILWVLNNI APQDGDSNQR LTCAFLRALI ARAARIGSCK  60
VLAAMANSRA NFTIHTHKFS VIELASFIDL TPWHRFGFTA ANAAILEAVE GYSVVHIVDL  120
SLTHCMQIPT LVDAIASRQD GNVSPPLLKL TVAGTTEDIP PMLDLSYEEL GFKLVNFARS  180
RNIILEFRVI PSSYTDGFAN LIQQLRVQNL VYAESGEALV VNCHMMLHYI PEETSTLPLI  240
NPNPSSSRST SSYAFDVELS SSSTTPSLRT MFLKALRGLD PTIVVLVDED ADLTSNNLVC  300
RLRSAFNYLW IPYDTVDTFL PRGSKQRQWY EADVCWKIEN VIAYEGFQRV ERLEPKCRWV  360
QRMRNANFRS VLFGEDAVSE VKAMLDEHAA GWGLKREEED VVLTWKGHNV VFATAWIPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-172GRAS family protein