PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015585.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 852aa MW: 97702 Da PI: 6.6357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015585.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	128.9	5.8e-40	31	198	183	352
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++e++++e+L+v++ E+++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++++ + +ns+ F++rf ea +ysalfd++ea++p e+e PCP015585.1 31 NQKWETIRFEDLKVDKYEMIVVNCMRRLRHIPDETVVVSSPRDTVLNLIKTINPDLFIHGVVNGTYNSPFFVTRFREAPFHYSALFDMFEATIPCEDE 128 5699******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 +r + E+++ r+i+nv+aceg er+er et+++W+ r ++ GFk + ++ ++ + + ++g++v+ PCP015585.1 129 HRLMFEKAIYCRDIMNVIACEGLERVERPETYKHWQVRYHRLGFKCEVFCNTKDQEFVSTQNL--VNGFQVN 198 ******************************************9766555444443333333..3466665 PP
2	GRAS	383.2	3.1e-117	480	850	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+av+s d++ a++lL+++++++sp+gd+++Rl +yf+ +L+arla++ + ly+ l + +t+ ++e l+a++++++ +P+ + h++ N+ PCP015585.1 480 TLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLSHYFADGLEARLAGTRTPLYSPLLSIQTP---VAEILKAYQMYVKYCPFKHMLHFLSNR 574 68**********************************************************999999...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpp++R+T+++ p++g +e++eetg+rL+k+A++++v+fe++v +a+++e+++le+L++ PCP015585.1 575 TIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPNIRLTAIELPQPGflPTERVEETGRRLKKYAARFNVQFEYKV-IAQKWETIQLEDLKI 671 *****************************************************************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++ + +ns+ F++rf eal+++sa+fd++ea++pre+e+r + E+++ g++i PCP015585.1 672 DRNELTVVNCMHRLKHIPDETVVVTSPRDIVLKLIRKINPDLFIHGVVNGAYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRLMFEKAVYGKDI 769 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +nvvaceg er+er et+++W+ r ++aGFk+vpl+++ k +k +l+ ++ d + ++e+ +++++gWk+r ++ + +W+ PCP015585.1 770 MNVVACEGLERVERPETFKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMDyHDDFLIDEDGEWMLQGWKGRIIFGLAFWK 850 **********************************************99999***********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MVSNGRAVSN ASLRDLVDLL IFVSQQLSSR NQKWETIRFE DLKVDKYEMI VVNCMRRLRH 60 IPDETVVVSS PRDTVLNLIK TINPDLFIHG VVNGTYNSPF FVTRFREAPF HYSALFDMFE 120 ATIPCEDEHR LMFEKAIYCR DIMNVIACEG LERVERPETY KHWQVRYHRL GFKCEVFCNT 180 KDQEFVSTQN LVNGFQVNHE PTNPLFLPTT TDHPTDSGLS SSGSDGDCFD ISDSRPVLKY 240 ISDILLEEDL EDKPCMLQNC LALVAAEKSF YDVLNVKDPP SPDQPPLHVY HSFEHSDDDS 300 SQSCHSSNDS RSARTDSVFD SSETLLASNS ISGNFGGVGE ARTLIPNGRY GIIDVERYQS 360 VPPGGNTLRR NFAPEPENDG YISANRLKGK KNRQREDGDY ADEGRSSKQS AALGDDAEPQ 420 EMFDRVLLCH VNHTHESCIR DKPLGSEVCE KLQPTKQSKG SKTTRSKKQN NNREVVDLPT 480 LLTQCAQAVA SYDQRTASEL LKQIRKHSSP YGDATERLSH YFADGLEARL AGTRTPLYSP 540 LLSIQTPVAE ILKAYQMYVK YCPFKHMLHF LSNRTIIKLA EKATRLHIVD FGISYGFQWP 600 CLIQRLSERN GGPPNIRLTA IELPQPGFLP TERVEETGRR LKKYAARFNV QFEYKVIAQK 660 WETIQLEDLK IDRNELTVVN CMHRLKHIPD ETVVVTSPRD IVLKLIRKIN PDLFIHGVVN 720 GAYNSPFFVT RFKEALYHFS AMFDMFEATI PREDEQRLMF EKAVYGKDIM NVVACEGLER 780 VERPETFKQW QVRYHRAGFK QVPLDQELLK RVKIMLKAMD YHDDFLIDED GEWMLQGWKG 840 RIIFGLAFWK PA

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MVSNGRAVSN ASLRDLVDLL IFVSQQLSSR NQKWETIRFE DLKVDKYEMI VVNCMRRLRH  60
IPDETVVVSS PRDTVLNLIK TINPDLFIHG VVNGTYNSPF FVTRFREAPF HYSALFDMFE  120
ATIPCEDEHR LMFEKAIYCR DIMNVIACEG LERVERPETY KHWQVRYHRL GFKCEVFCNT  180
KDQEFVSTQN LVNGFQVNHE PTNPLFLPTT TDHPTDSGLS SSGSDGDCFD ISDSRPVLKY  240
ISDILLEEDL EDKPCMLQNC LALVAAEKSF YDVLNVKDPP SPDQPPLHVY HSFEHSDDDS  300
SQSCHSSNDS RSARTDSVFD SSETLLASNS ISGNFGGVGE ARTLIPNGRY GIIDVERYQS  360
VPPGGNTLRR NFAPEPENDG YISANRLKGK KNRQREDGDY ADEGRSSKQS AALGDDAEPQ  420
EMFDRVLLCH VNHTHESCIR DKPLGSEVCE KLQPTKQSKG SKTTRSKKQN NNREVVDLPT  480
LLTQCAQAVA SYDQRTASEL LKQIRKHSSP YGDATERLSH YFADGLEARL AGTRTPLYSP  540
LLSIQTPVAE ILKAYQMYVK YCPFKHMLHF LSNRTIIKLA EKATRLHIVD FGISYGFQWP  600
CLIQRLSERN GGPPNIRLTA IELPQPGFLP TERVEETGRR LKKYAARFNV QFEYKVIAQK  660
WETIQLEDLK IDRNELTVVN CMHRLKHIPD ETVVVTSPRD IVLKLIRKIN PDLFIHGVVN  720
GAYNSPFFVT RFKEALYHFS AMFDMFEATI PREDEQRLMF EKAVYGKDIM NVVACEGLER  780
VERPETFKQW QVRYHRAGFK QVPLDQELLK RVKIMLKAMD YHDDFLIDED GEWMLQGWKG  840
RIIFGLAFWK PA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-180	GRAS family protein