PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015584.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 1044aa MW: 118053 Da PI: 5.9011

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015584.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.9	2.4e-108	311	678	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ cA+ v+s d+++a++ L++++ ++sp+gd +qRla y++++L+ rl v++ + +lp se + ++ l+a++++ ++P+ k+s++ aNq PCP015584.1 311 TLLTICAQSVASYDKRKANEQLKQIRLNSSPYGDDTQRLAYYVANGLELRLGADVPSNA-SLPRSEM---SAADILKAYQTYITACPFQKMSNIYANQ 404 68999*********************************************9666554.3444444...49********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ +e+ +r+HiiDf++ +G QWp+L+q L++R++gpp+lRiTgv+ p++g +e++e+tg+rLa+++++++vpf++n+ +a+++e+++ e++++ PCP015584.1 405 TILKQAEKTTRLHIIDFGVLYGYQWPSLIQDLSKRNGGPPMLRITGVEFPQPGfrPSERVEQTGRRLANYCKRFNVPFKYNI-IATNWETIRSEDIKI 501 ************************************************9************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E ++Vn+ ++l++l d++v+ + rd+vLkl++++sP+++++ + ++n++ F rf eal ++s+lf+++e+++pre+ +r +E+e++gr++ PCP015584.1 502 DRDELTVVNCLYRLKNLQDDTVTDSP-RDTVLKLIRRISPDLFIHGVVNGSYNAPFFDIRFREALFHFSSLFNMFEETVPREDPQRLLYEQEVFGRDV 598 *************977777666.******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg +r+er et+++W+ r ++aGF++vp ++++ k++++++++ + + ++v+e+ ++++gWk+r ++S W+ PCP015584.1 599 INVIACEGPRRVERPETYKQWQTRNKRAGFRQVPSDQEILKEVRSMVKRDYHKDFSVDEDGMWMLQGWKGRIFHAISYWK 678 *********************************************99888***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence
MDTFEDELPS PMNKSVIEQV DDSNANPVHE FEASHDFTDH NFFPVNSDPS DNLSSLPGVS 60 TEVNFPERSE ASNAILKYIS EMLMEEEEYL VNKPCMLQEG LALQAAEKSL HDVLVQDQNP 120 SSSDPLLNFI HRNVEAPNEG SNHSSTGSIA AGNRVGLDWG SVQDVFESSR AQIPNPLVLS 180 GEGGITHLKH NSSSVVELRE LQGNDVSFNS DKDGSDSSNG SRSKRSHQRE DEDSLDDWRR 240 NKDPAVYADE FELPQLFDEV LLCQGEKQES NSCSPKESEK LQLNRKSKGS KGKKTRKKKL 300 DDNAGMVDLW TLLTICAQSV ASYDKRKANE QLKQIRLNSS PYGDDTQRLA YYVANGLELR 360 LGADVPSNAS LPRSEMSAAD ILKAYQTYIT ACPFQKMSNI YANQTILKQA EKTTRLHIID 420 FGVLYGYQWP SLIQDLSKRN GGPPMLRITG VEFPQPGFRP SERVEQTGRR LANYCKRFNV 480 PFKYNIIATN WETIRSEDIK IDRDELTVVN CLYRLKNLQD DTVTDSPRDT VLKLIRRISP 540 DLFIHGVVNG SYNAPFFDIR FREALFHFSS LFNMFEETVP REDPQRLLYE QEVFGRDVIN 600 VIACEGPRRV ERPETYKQWQ TRNKRAGFRQ VPSDQEILKE VRSMVKRDYH KDFSVDEDGM 660 WMLQGWKGRI FHAISYWKPK WVSLFITVYL KSDIGNILAS GSLLDPVNMA YEDFRTSAFE 720 QSYRCYPVSF IEKLPVCTDS PLILALQPHL EKGDKILMPP SALDRLASLQ IDYPMLFELN 780 NPTVGRATHC GVLEFVADEG LIYLPYWMMQ NMLLQEGDIC QVKNKSLVKG TYVKLQPHTT 840 DFLDISNPKA ILETTLRSYS CLTTGDTIMV PYNNKQYYIN IVETKPSPAI SIIETDCEVD 900 FAPPLDYVEP VKPAPPTLSK KRPQEAEEVQ PEKIPKFNPF TGSARRLDGK PMTESVAPVS 960 APILKQHQQE SENGTKDSKS STCAARKSGK LVFGSNGNQP TKETPKVAPK NSKPEPSKKV 1020 EHTPQKAEEP KFQAFTGKKY SLKG

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence

MDTFEDELPS PMNKSVIEQV DDSNANPVHE FEASHDFTDH NFFPVNSDPS DNLSSLPGVS  60
TEVNFPERSE ASNAILKYIS EMLMEEEEYL VNKPCMLQEG LALQAAEKSL HDVLVQDQNP  120
SSSDPLLNFI HRNVEAPNEG SNHSSTGSIA AGNRVGLDWG SVQDVFESSR AQIPNPLVLS  180
GEGGITHLKH NSSSVVELRE LQGNDVSFNS DKDGSDSSNG SRSKRSHQRE DEDSLDDWRR  240
NKDPAVYADE FELPQLFDEV LLCQGEKQES NSCSPKESEK LQLNRKSKGS KGKKTRKKKL  300
DDNAGMVDLW TLLTICAQSV ASYDKRKANE QLKQIRLNSS PYGDDTQRLA YYVANGLELR  360
LGADVPSNAS LPRSEMSAAD ILKAYQTYIT ACPFQKMSNI YANQTILKQA EKTTRLHIID  420
FGVLYGYQWP SLIQDLSKRN GGPPMLRITG VEFPQPGFRP SERVEQTGRR LANYCKRFNV  480
PFKYNIIATN WETIRSEDIK IDRDELTVVN CLYRLKNLQD DTVTDSPRDT VLKLIRRISP  540
DLFIHGVVNG SYNAPFFDIR FREALFHFSS LFNMFEETVP REDPQRLLYE QEVFGRDVIN  600
VIACEGPRRV ERPETYKQWQ TRNKRAGFRQ VPSDQEILKE VRSMVKRDYH KDFSVDEDGM  660
WMLQGWKGRI FHAISYWKPK WVSLFITVYL KSDIGNILAS GSLLDPVNMA YEDFRTSAFE  720
QSYRCYPVSF IEKLPVCTDS PLILALQPHL EKGDKILMPP SALDRLASLQ IDYPMLFELN  780
NPTVGRATHC GVLEFVADEG LIYLPYWMMQ NMLLQEGDIC QVKNKSLVKG TYVKLQPHTT  840
DFLDISNPKA ILETTLRSYS CLTTGDTIMV PYNNKQYYIN IVETKPSPAI SIIETDCEVD  900
FAPPLDYVEP VKPAPPTLSK KRPQEAEEVQ PEKIPKFNPF TGSARRLDGK PMTESVAPVS  960
APILKQHQQE SENGTKDSKS STCAARKSGK LVFGSNGNQP TKETPKVAPK NSKPEPSKKV  1020
EHTPQKAEEP KFQAFTGKKY SLKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	300	RKSKGSKGKKTRKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-158	GRAS family protein