PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015505.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 533aa    MW: 58949.6 Da    PI: 5.0024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015505.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.91.2e-1321635331374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+e+L +cA+a++++d++ +++l ++l++++s +g+p+qRl ay++e+L arla s+s+++++l+++e +   s+e l+++++++ev+P++kf+++ a
  PCP015505.1 163 LKEVLCACAKALANNDMSTTEQLFSNLRQMVSVSGEPIQRLGAYILEGLIARLALSGSSICASLRCKEPA---SAELLSYMHILYEVCPYFKFGYMSA 257
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +    ++++le+L
  PCP015505.1 258 NGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALATRPGGPPQIRITGIDDSTSAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-AGIFGSEVQLEDL 354
                  ***************************************************998899999************************.78899******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++pgEa+aVn++l+lh+++desvs++++rd++L+l kslsPkvv++veqe+++n+ +Fl rf+e+l+y+sa+fds+++ lpre++eri+vE+++l+r
  PCP015505.1 355 VIRPGEAIAVNFALMLHHIPDESVSSQNHRDRLLRLAKSLSPKVVTLVEQESNTNTVPFLPRFTETLSYFSAVFDSIDVALPREHRERINVEQHCLAR 452
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  eivn++acegaer+er e l+kWr+r+ +aGF+p+pls  +++++k+ll+ ++++ y++ee  g+l+lgW+++pLv+ +aWr
  PCP015505.1 453 EIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPYPLSPLVNATIKTLLQSYSEK-YTLEEMGGALYLGWMNQPLVVSCAWR 533
                  *****************************************************65.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MRESYKHIIP NVPRRIGEQP VEEPESSFQN VEQQASSDEV VQGTQLSVQR FEQHCTLESS  60
SGTSGYPGRS SPSSLNFSAN GSPASHPDVH SYQSCGSPVN QSCISNETDD LGHKIRELEN  120
ALLGNDSDAF DAYNIIDEVG ANQIYSEAEH WEQMMVMIRG SDLKEVLCAC AKALANNDMS  180
TTEQLFSNLR QMVSVSGEPI QRLGAYILEG LIARLALSGS SICASLRCKE PASAELLSYM  240
HILYEVCPYF KFGYMSANGA IAEAMKDESR VHIIDFQVAQ GSQWITLIQA LATRPGGPPQ  300
IRITGIDDST SAYVRGGGLG VVGQRLSRLA ESCKVPFEFH AAGIFGSEVQ LEDLVIRPGE  360
AIAVNFALML HHIPDESVSS QNHRDRLLRL AKSLSPKVVT LVEQESNTNT VPFLPRFTET  420
LSYFSAVFDS IDVALPREHR ERINVEQHCL AREIVNIIAC EGAERVERYE PLSKWRSRFI  480
MAGFSPYPLS PLVNATIKTL LQSYSEKYTL EEMGGALYLG WMNQPLVVSC AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein