PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015424.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 343aa MW: 38670.5 Da PI: 7.0559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015424.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv++++++G g+W+t+++ g++R++k+c++rw +yl PCP015424.1 14 KGPWTPEEDHKLVHYIQKHGHGRWRTVPKNAGLKRCGKSCRLRWANYL 61 79********************************************97 PP
2	Myb_DNA-binding	56	9.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W+tIa++++ gRt++++k++w+++ PCP015424.1 67 RGRFSLEEEETIIQLHSVLGNK-WSTIASRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGKIPCCETN GLKKGPWTPE EDHKLVHYIQ KHGHGRWRTV PKNAGLKRCG KSCRLRWANY 60 LRPDIKRGRF SLEEEETIIQ LHSVLGNKWS TIASRLPGRT DNEIKNYWNT HIRKRLLKMG 120 IDPVTHTPRL DLLELTSLLS STLCNSSSDN LQLNIPNLLS IGPIMDPELL NLTATLLSSQ 180 RRPQSSYPEF PSKNHAQQNP LSLLQNNDQN QFQSNQLPSI APFLNQPLIT DFGHPCSTNG 240 ADQSSFVPII TNQVDSYDSY YESIISHNIP GQDYQPACIS DNVNNQSFQN MCSFGSLLST 300 PSSSPATTTY ANCCTEDERD SFCSNILNMY HDIPNDLNVT QLL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGKIPCCETN GLKKGPWTPE EDHKLVHYIQ KHGHGRWRTV PKNAGLKRCG KSCRLRWANY  60
LRPDIKRGRF SLEEEETIIQ LHSVLGNKWS TIASRLPGRT DNEIKNYWNT HIRKRLLKMG  120
IDPVTHTPRL DLLELTSLLS STLCNSSSDN LQLNIPNLLS IGPIMDPELL NLTATLLSSQ  180
RRPQSSYPEF PSKNHAQQNP LSLLQNNDQN QFQSNQLPSI APFLNQPLIT DFGHPCSTNG  240
ADQSSFVPII TNQVDSYDSY YESIISHNIP GQDYQPACIS DNVNNQSFQN MCSFGSLLST  300
PSSSPATTTY ANCCTEDERD SFCSNILNMY HDIPNDLNVT QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	2e-83	MYB family protein