PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015272.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 623aa    MW: 69867.8 Da    PI: 9.1565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015272.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-1718103899
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  s  l+s rl +p +f+++++gk+  s  + l  +sg  W+v+l    + g+ +l  GW  Fv+++ ++ gDf++F++dg+ +f  +v +f++
  PCP015272.1  18 SADLSSERLKIPERFMRHMEGKT--SGLVALFGPSGSAWSVEL--IEQNGGLFLHHGWPAFVRDHYVECGDFLIFRYDGDLRF--TVLIFDQ 103
                  66788999********8888885..448***************..888899**************************997666..9999987 PP
2B346.28.5e-152473261496
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    l +p kf  +h   ++++++++l++ +g+sW+v+    ++   +++l +GW  Fv+ n+++ gD+++F+l+++ ef  +v++
  PCP015272.1 247 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsNRVHTSHTLCGGWMAFVRYNDIQLGDICTFELVRECEF--RVHI 326
                  4689*****99996..45999***************9555666667***************************99999..4544 PP
3B347.43.4e-15453545196
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k++++ + + s  l +p +f +e+  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g++e    v+
  PCP015272.1 453 FVKIMKKFNISGSYTLKIPYQFSTEYlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDINIGDVCIFELVGKDEM--QVH 544
                  778888888888889***********533....4468***************5544444379999**********************985444..555 PP

                  E CS
           B3  96 v 96 
                  +
  PCP015272.1 545 I 545
                  4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    
MAEEARNVRS PHFFAFYSAD LSSERLKIPE RFMRHMEGKT SGLVALFGPS GSAWSVELIE  60
QNGGLFLHHG WPAFVRDHYV ECGDFLIFRY DGDLRFTVLI FDQSACEKEA AFRFGYGQDS  120
RNFEKYMYMG RKRGRGEVAS SGNKLVDGAV KKIRNGSSQF RSECIGEGRE EETCSTEKNP  180
HENPGLDVVS YKAKASIQNM CGKGDGLNVN GRVCMQMSSA HEVAPSCSSS NPYFVRIIKS  240
FNISGSYTLN IPYKFSVAHL PNCKVKIVLQ NWKGESWTVN SVPSNRVHTS HTLCGGWMAF  300
VRYNDIQLGD ICTFELVREC EFRVHIQKGE TSSWLSPGLA VTTHKTIKGL SKKMKGNSPK  360
VLSKSIREIA DKLSSKKDQD AAFINDTRKY GSTSRSLTKA ALAQSKVASK KLVNRRKKVV  420
EDELDSKSSG LRIKLTLDEE RIARSFTSCF PNFVKIMKKF NISGSYTLKI PYQFSTEYLP  480
NYKTEIVLRN SKGECWTVNS VPDSKGRVVH TFCGGWMAFV RGNDINIGDV CIFELVGKDE  540
MQVHISGVGK KGFEADKEHL FGIMHAALKR SLHSQALFLL LILSVTEKLV TVIGFHSLEF  600
SYDWYGTLDA IDMNDRTEGD VVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136GRKRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-17B3 family protein