PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015184.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 360aa MW: 39855.2 Da PI: 9.582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015184.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.3	6.3e-21	55	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a PCP015184.1 55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAVarrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMDA 146 8******************************9999965556667789*********************977999********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MASPPSSPQD DSILPLQSDP PQAVPLALPA PPLTLSQQTQ PNPTPPSSRR LPPPCWSHDE 60 TVALIDSYRE KWYSLRRGNL KATHWQDVAD AVARRCPAAS PAKTAVQCRH KMEKLRKRYR 120 TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEENEE NEEEEDPDQE 180 LYEELRYGSN MKSMSKLYRN GVGVGGGSGG GAGAGSGFRI RIPTGVSIAQ PGTKVYPKMD 240 QKFGMNSNPG SNSGSVYGSA KVMREGGNSG RPGLGKRERD GGERDPVAEM VSAIKLLGDG 300 FVRMEQMKME MAREIEAMRM EMEMKRTEMI LDSQQRIVEA FAKAVSEKKK KAKRMPSPEA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MASPPSSPQD DSILPLQSDP PQAVPLALPA PPLTLSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AVARRCPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEENEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GVGVGGGSGG GAGAGSGFRI RIPTGVSIAQ PGTKVYPKMD  240
QKFGMNSNPG SNSGSVYGSA KVMREGGNSG RPGLGKRERD GGERDPVAEM VSAIKLLGDG  300
FVRMEQMKME MAREIEAMRM EMEMKRTEMI LDSQQRIVEA FAKAVSEKKK KAKRMPSPEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-63	Trihelix family protein