PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014844.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

RAV

Protein Properties

Length: 353aa MW: 40943 Da PI: 6.4285

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014844.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.2	5.6e-10	47	94	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++ PCP014844.1 47 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAVKLRN 94 789996.566899**999......44******99**********997 PP
2	B3	93.9	1.2e-29	172	267	1	89
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ltpsdv+k++rlv+pkk+a e+ +++ +e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F+ + s+ PCP014844.1 172 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEENVTEDIELVFYDKLMRVWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVITFYACE-SD 267 99***************************9996677899************************************************654.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MAEDASIMIS SAQRNVGLET SDSNETDFAL LHQNKRARHD NDVSFAKFKG VVPQQNGHWG 60 AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGKDLHR NFPWTNFTIQ EPDFQNHYTT 120 DAIIKMIRDG SYPSKFDAFV RSQTQSRIEE MSKGTNPIRV HGDGQVLCRQ LFQKELTPSD 180 VGKLNRLVIP KKYAVEYFPC ICENVEENVT EDIELVFYDK LMRVWKFRYC YWRSSQSFVF 240 TRGWNRFVKE NNLKANDVIT FYACESDGQV IREEDRESTT FWLIDVMHNE GESKRLCLVE 300 EANECKDLQV KLELNLGECS SYKFQKGEGK YSEDHRASIA EEKGIRLFGV NIN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MAEDASIMIS SAQRNVGLET SDSNETDFAL LHQNKRARHD NDVSFAKFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGKDLHR NFPWTNFTIQ EPDFQNHYTT  120
DAIIKMIRDG SYPSKFDAFV RSQTQSRIEE MSKGTNPIRV HGDGQVLCRQ LFQKELTPSD  180
VGKLNRLVIP KKYAVEYFPC ICENVEENVT EDIELVFYDK LMRVWKFRYC YWRSSQSFVF  240
TRGWNRFVKE NNLKANDVIT FYACESDGQV IREEDRESTT FWLIDVMHNE GESKRLCLVE  300
EANECKDLQV KLELNLGECS SYKFQKGEGK YSEDHRASIA EEKGIRLFGV NIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-105	RAV family protein