PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013810.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 651aa MW: 70617.4 Da PI: 7.1189

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013810.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.8e-24	214	258	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PCP013810.1 214 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 258 79****************************************985 PP
2	QLQ	59.7	8.5e-21	149	185	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +i+k PCP013810.1 149 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPIKK 185 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MDFGVMGLEG LVGPDAGGGE AAENVGDGSG SASAKQQRSW PAEDDWRDSK MLKNEDLNSP 60 KTMPLQYQGT PLLRSNSQLL PPPAESHRQE QMLSFSNNKS ESFLSKDGDF AYYQRNPTPI 120 PSPYPRNAGS PGYGSLNQSM HGTFTGARGP FTPSQWIELE HQALIYKYMT SNVPVPSNLL 180 IPIKKSLYPY GLSGPSNPTS TWGAYHLGFS GNNDPEPGRC RRTDGKKWRC SRDAVADQKY 240 CERHINRGRH RSRKPVEGQP GQAVSGTSNS KRVPMNSPMS TSVMPSSGAS SSLTTAQQQF 300 KSLQPAVAAN PSADAFVNRM QGQQGVSVMS APTLRLKSNN STSNIGKQEF LVEEASQAEF 360 GLVSTDSLLN PSHRNSYISK DFSGSFLHFG DQDTQDHHPL RQFMDDWPKD QSCHSVSTWP 420 EEVKSDWTQL SMSIPMASSE FSSSSSSPKH EKLALSPLRL SREFEPAQMN LGISKDISES 480 SQKQTNWIPI TWGKFNGGSL RRGWDGSPQL GSSPTGVLQK STFCSLSNSS SGSSPRGGEN 540 KKSSLDGASI YDDVLGSTFA SSSVPSLIVE LYNSSEEDLC PETLKTVGTT AMSDVIKSEN 600 GKIRFGSSLA LRQGALLWAV NPTCSTYVWL LGYGPGNTEC GDLPPLSLTL I

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MDFGVMGLEG LVGPDAGGGE AAENVGDGSG SASAKQQRSW PAEDDWRDSK MLKNEDLNSP  60
KTMPLQYQGT PLLRSNSQLL PPPAESHRQE QMLSFSNNKS ESFLSKDGDF AYYQRNPTPI  120
PSPYPRNAGS PGYGSLNQSM HGTFTGARGP FTPSQWIELE HQALIYKYMT SNVPVPSNLL  180
IPIKKSLYPY GLSGPSNPTS TWGAYHLGFS GNNDPEPGRC RRTDGKKWRC SRDAVADQKY  240
CERHINRGRH RSRKPVEGQP GQAVSGTSNS KRVPMNSPMS TSVMPSSGAS SSLTTAQQQF  300
KSLQPAVAAN PSADAFVNRM QGQQGVSVMS APTLRLKSNN STSNIGKQEF LVEEASQAEF  360
GLVSTDSLLN PSHRNSYISK DFSGSFLHFG DQDTQDHHPL RQFMDDWPKD QSCHSVSTWP  420
EEVKSDWTQL SMSIPMASSE FSSSSSSPKH EKLALSPLRL SREFEPAQMN LGISKDISES  480
SQKQTNWIPI TWGKFNGGSL RRGWDGSPQL GSSPTGVLQK STFCSLSNSS SGSSPRGGEN  540
KKSSLDGASI YDDVLGSTFA SSSVPSLIVE LYNSSEEDLC PETLKTVGTT AMSDVIKSEN  600
GKIRFGSSLA LRQGALLWAV NPTCSTYVWL LGYGPGNTEC GDLPPLSLTL I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-104	GRF family protein