PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013569.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 577aa MW: 63706.8 Da PI: 8.3156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013569.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP013569.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	15.4	5.4e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PCP013569.1 145 WKCDKCSKKYAVQSDWKAHQKTC 167 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MSNITGDVEE GSFSSGNNTG ELEVRRDQKQ QENHLHRSSS GGASGAQSNN PSAEVIALSP 60 TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TTTEVRKRVY ICPEPTCVHH 120 NPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHQKTCGTR EYKCDCGTIF 180 SRRDSFITHR AFCDALAEEN NKVNQMPMPL DQLIPSMAMN TSTSTMGGGG VSEFLNYDIN 240 PNKNKLPEDL VQMPFKSMNM NMNIPGGGAG PGMFSSTTGS LFGGPRSVSS TSASSLQLSS 300 NNNNSSLGFN YLHNQEIKNG GSSLSSITGA AQMSATALLQ KAAQMGASAS NSTINSPMMQ 360 KSFVSSMAGP DHGHLSSPNS LLNNNIRPPP SYDHQPHHFQ QQPQASDPLS YNSHNMIGGF 420 TNQLMQKDPQ EMSQLFDHHS NNSAASSAMT DMGLFSQVFM GIDGNPHQHH QSHQALLKNF 480 EQDHQDINSP NNNSSSSIST HRMKSALGPS TTLDLLGIGG SRPPNLHEQH HHHHNQQQRL 540 DLEAMSQHRL PAMMNTFQQQ QQRSHEDSAM EKQIWDV

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MSNITGDVEE GSFSSGNNTG ELEVRRDQKQ QENHLHRSSS GGASGAQSNN PSAEVIALSP  60
TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TTTEVRKRVY ICPEPTCVHH  120
NPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHQKTCGTR EYKCDCGTIF  180
SRRDSFITHR AFCDALAEEN NKVNQMPMPL DQLIPSMAMN TSTSTMGGGG VSEFLNYDIN  240
PNKNKLPEDL VQMPFKSMNM NMNIPGGGAG PGMFSSTTGS LFGGPRSVSS TSASSLQLSS  300
NNNNSSLGFN YLHNQEIKNG GSSLSSITGA AQMSATALLQ KAAQMGASAS NSTINSPMMQ  360
KSFVSSMAGP DHGHLSSPNS LLNNNIRPPP SYDHQPHHFQ QQPQASDPLS YNSHNMIGGF  420
TNQLMQKDPQ EMSQLFDHHS NNSAASSAMT DMGLFSQVFM GIDGNPHQHH QSHQALLKNF  480
EQDHQDINSP NNNSSSSIST HRMKSALGPS TTLDLLGIGG SRPPNLHEQH HHHHNQQQRL  540
DLEAMSQHRL PAMMNTFQQQ QQRSHEDSAM EKQIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-92	C2H2 family protein