PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012611.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 475aa    MW: 52508.2 Da    PI: 7.5716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012611.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31023.3e-32108212199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  PCP012611.1 108 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGEvGKDHL 205
                  89****************************66677899*************************************************76677799999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  PCP012611.1 206 FIDWRRR 212
                  9999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MNFGAAAGGA IGGGISTEDD QNMVRGKLPF SYASSPTSSS SSPHYNKTTG IATMVPASAV  60
SRSSGWHDGG SGPDMKLELM DSSPRENNEG GGAQREENPI PIEREHMFDK VVTPSDVGKL  120
NRLVIPKQHA EKYFPLDSSS NEKGLLLNFE DRNGKSWRFR YSYWNSSQSY VMTKGWSRFV  180
KEKKLDAGDI VSFQRGLGEV GKDHLFIDWR RRPDAPDPNH HPLHHYPLHS HHPHYQPNFA  240
IPHQHQYSWN PHRSVPWSPL LMRPPGAVMT REHLHLSQPQ INSGVHHPYR NTGTSGGGGS  300
GSYGYGNVVN SSGPIYYMRS ASSAAGQPQF YEQEGSGLIE LQQQQQHQQV QLGRVHNESN  360
MVLESVPLVH GKAAAKRMRL FGVNMECPIS ESDHECDLLS SATLSSSSSS SQYHHHHAHQ  420
QLSPSQPAPL QLRLYDGMPL RHQAMPSTTT TSTTTDFLNI SGKASSSSMS LDFEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-65B3 family protein