PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012447.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 541aa MW: 58709.9 Da PI: 7.0974

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012447.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.7e-18	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ lv++v+++G g+W+++ r g++R++k+c++rw ++l PCP012447.1 44 KGPWTAAEDQVLVEYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 91 79******************************************9986 PP
2	Myb_DNA-binding	47.7	3.5e-15	97	140	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g ++++E+ l++++++++G++ W++ a+ ++ gRt++++k++w++ PCP012447.1 97 KGCFSPDEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 140 689*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MTPNSNDSIN INGGSVLQSQ GLPESRGGDG GGGLVVEGSK GLKKGPWTAA EDQVLVEYVR 60 KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGCF SPDEERLILE LHAKYGNKWA 120 RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPHDIKQS QYSYSHSHSH SPPTSLTLPN 180 GVLNPPTTPT QNSLHPNTDN SPSPTFCFQI QSPTQTHHHP HIPPLSPTPP SLSPLSSPHQ 240 PKPTSATSLP LFDPTATAST PSFTFHRPAP ILGAPLSHKR YRDSVGYSPP ISPAPQRNTS 300 ILRTSSMPDI ASFQLTAAGT STMPDMSSFQ FPRTFNNPFP PMSRTQFEYS DGLLSPSSSV 360 YSVKSELPSN QVSQTHSEVT IEAKVSSTVA AVSAADENNG LLEDLLQEAE ALACGGSGGG 420 GNNNSRVRGN GMLGSFDEKQ VSDGYGRWLQ STTSMEAKPI HDDHLNSMPE DLSKLFSFIP 480 STEPVSDWYS DSGELSNGHS SSVTDTGLDF DMQHMASLFP FTATGEHGRA SSSWDNLPGI 540 C

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MTPNSNDSIN INGGSVLQSQ GLPESRGGDG GGGLVVEGSK GLKKGPWTAA EDQVLVEYVR  60
KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGCF SPDEERLILE LHAKYGNKWA  120
RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPHDIKQS QYSYSHSHSH SPPTSLTLPN  180
GVLNPPTTPT QNSLHPNTDN SPSPTFCFQI QSPTQTHHHP HIPPLSPTPP SLSPLSSPHQ  240
PKPTSATSLP LFDPTATAST PSFTFHRPAP ILGAPLSHKR YRDSVGYSPP ISPAPQRNTS  300
ILRTSSMPDI ASFQLTAAGT STMPDMSSFQ FPRTFNNPFP PMSRTQFEYS DGLLSPSSSV  360
YSVKSELPSN QVSQTHSEVT IEAKVSSTVA AVSAADENNG LLEDLLQEAE ALACGGSGGG  420
GNNNSRVRGN GMLGSFDEKQ VSDGYGRWLQ STTSMEAKPI HDDHLNSMPE DLSKLFSFIP  480
STEPVSDWYS DSGELSNGHS SSVTDTGLDF DMQHMASLFP FTATGEHGRA SSSWDNLPGI  540
C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-66	MYB family protein