PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012446.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 893aa MW: 98519.8 Da PI: 6.1431

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012446.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.4e-18	379	426	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d+v+++G g+W+++ r g++R++k+c++rw ++l PCP012446.1 379 KGPWTAAEDQILMDYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 426 79******************************************9986 PP
2	Myb_DNA-binding	46.8	7e-15	432	475	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l+++++ ++G++ W++ a+ ++ gRt++++k++w++ PCP012446.1 432 KGSFSPDEERLILELHSKYGNK-WARMASQLP-GRTDNEIKNYWNT 475 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MMNKLIQERR EQCLLEISNE VDKYLVIPYI SIVVGGFDLL NWWKSNTKEF PILSQIAKDM 60 FAIPTSTVAS ENAFSLGKRV MDPFRASLTP KMVVALVCTS DWLRADEVNF YKKPTEDMLQ 120 FYKEMEEVET NYEKPLDILV PLSGPESLLL LISTSYLKRG VNDRGRVAND VEIKQTILDE 180 EDGSCKGKMS SVVQMRGSIP LFWSEEASGF VQRYDPTYQA TKLHFEDLAM RYGNPVIVLN 240 LIKNLLRREP LKLVDGSQSH RTFVYINDAV EAVMLMIEIL LGPMVTSSMW ATLTMKLLDV 300 AVDHSSSECD QCASCIFAPT TSANLCGAFV DRDLIMTPNS NDSININGGS MLQSQGLPES 360 RGGDGGGGHV VEGSKGLKKG PWTAAEDQIL MDYVRKHGEG NWNSVQRNSG LNRCGKSCRL 420 RWANHLRPNL KKGSFSPDEE RLILELHSKY GNKWARMASQ LPGRTDNEIK NYWNTRVKRR 480 QRQGLPLYPH DIKQSQYSYS HSHSHSPPTS LTIPNGVLNP PTTSTQNSLH PNTDNSPSPT 540 FCFQIQSPTQ THHHHHIPPL SPTTPCLSPL SSPHQPKPTS LTSLPLFDPT ATATASTSSF 600 SSSTPSFTFH RPAPILGAPL RYKRYRDSVG YSPPISPTPQ RYTSILRTSS MPDIASFQLT 660 AAGTSTMPDI SSFQFPRTFN NPFPPMPPTQ FEYSDGLLSP SGSVYSVQSE LPSNQVSQMH 720 SEITIDANVA VAAESVADEN NSGNGLLEDM LQEAEALARG GGGGGGGGNN NSRMRGNGML 780 GSFDEKQVSD DYGRWLQSTT SMASSLFEAK PIHDDHLNSM PEDLSKLFSF IPSTEPVSDW 840 YSDSGELSNG HSSGVTDTSL DFDMQHMASL FPITATGEHG RASSSWDNLP GIC

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MMNKLIQERR EQCLLEISNE VDKYLVIPYI SIVVGGFDLL NWWKSNTKEF PILSQIAKDM  60
FAIPTSTVAS ENAFSLGKRV MDPFRASLTP KMVVALVCTS DWLRADEVNF YKKPTEDMLQ  120
FYKEMEEVET NYEKPLDILV PLSGPESLLL LISTSYLKRG VNDRGRVAND VEIKQTILDE  180
EDGSCKGKMS SVVQMRGSIP LFWSEEASGF VQRYDPTYQA TKLHFEDLAM RYGNPVIVLN  240
LIKNLLRREP LKLVDGSQSH RTFVYINDAV EAVMLMIEIL LGPMVTSSMW ATLTMKLLDV  300
AVDHSSSECD QCASCIFAPT TSANLCGAFV DRDLIMTPNS NDSININGGS MLQSQGLPES  360
RGGDGGGGHV VEGSKGLKKG PWTAAEDQIL MDYVRKHGEG NWNSVQRNSG LNRCGKSCRL  420
RWANHLRPNL KKGSFSPDEE RLILELHSKY GNKWARMASQ LPGRTDNEIK NYWNTRVKRR  480
QRQGLPLYPH DIKQSQYSYS HSHSHSPPTS LTIPNGVLNP PTTSTQNSLH PNTDNSPSPT  540
FCFQIQSPTQ THHHHHIPPL SPTTPCLSPL SSPHQPKPTS LTSLPLFDPT ATATASTSSF  600
SSSTPSFTFH RPAPILGAPL RYKRYRDSVG YSPPISPTPQ RYTSILRTSS MPDIASFQLT  660
AAGTSTMPDI SSFQFPRTFN NPFPPMPPTQ FEYSDGLLSP SGSVYSVQSE LPSNQVSQMH  720
SEITIDANVA VAAESVADEN NSGNGLLEDM LQEAEALARG GGGGGGGGNN NSRMRGNGML  780
GSFDEKQVSD DYGRWLQSTT SMASSLFEAK PIHDDHLNSM PEDLSKLFSF IPSTEPVSDW  840
YSDSGELSNG HSSGVTDTSL DFDMQHMASL FPITATGEHG RASSSWDNLP GIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	3e-66	MYB family protein