PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012436.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 351aa MW: 39206.8 Da PI: 5.4686

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012436.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	15	63	1	48
TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdell++++ k +G g+W++ ++ g+ R++k+c++rw +yl PCP012436.1 15 KGPWSPEEDELLLNYIiKNHGHGSWRSLPKLAGLQRCGKSCRLRWTNYL 63 79**********973668888**********************97 PP
2	Myb_DNA-binding	49.5	9.7e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++++ +lG++ W+tIa+ ++ gRt++++k+ w+++l PCP012436.1 69 RGPFSKDEEKLIIQLHGMLGNR-WATIASQLP-GRTDNEIKNLWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRTPCCDNK KDLKKGPWSP EEDELLLNYI IKNHGHGSWR SLPKLAGLQR CGKSCRLRWT 60 NYLRPDIKRG PFSKDEEKLI IQLHGMLGNR WATIASQLPG RTDNEIKNLW NTHLRKGLIA 120 VGIDPQTHEP LASNCLSNNA PASAATRHMA QWESARLEAE ARLSRDSSLF SRVPEKSESD 180 HFLRLWNSEV GKSFRKLSTS DKFACQSPIS QASSSTKCGS LSAVTTEVGN LTGSSIMAGN 240 QNEDLIYRPF LINTEDVEYK PFQFNTEEVG YKPFQSNTEE VEFKICQSNT EDVMAGSVSS 300 CSNDLEDSSD TALQLLLDYP TNDDMSFLEN NANDYATTPA ELTPNSFICP L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRTPCCDNK KDLKKGPWSP EEDELLLNYI IKNHGHGSWR SLPKLAGLQR CGKSCRLRWT  60
NYLRPDIKRG PFSKDEEKLI IQLHGMLGNR WATIASQLPG RTDNEIKNLW NTHLRKGLIA  120
VGIDPQTHEP LASNCLSNNA PASAATRHMA QWESARLEAE ARLSRDSSLF SRVPEKSESD  180
HFLRLWNSEV GKSFRKLSTS DKFACQSPIS QASSSTKCGS LSAVTTEVGN LTGSSIMAGN  240
QNEDLIYRPF LINTEDVEYK PFQFNTEEVG YKPFQSNTEE VEFKICQSNT EDVMAGSVSS  300
CSNDLEDSSD TALQLLLDYP TNDDMSFLEN NANDYATTPA ELTPNSFICP L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-118	MYB family protein