PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012290.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 272aa    MW: 31045.6 Da    PI: 5.3368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012290.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111538123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 y C+ Cg+ ++++ +LkrH +  H
  PCP012290.1 15 YICGVCGRKCKSNLDLKRHFKQlH 38
                 89*****************98777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MALKQLAQRF GEEPYICGVC GRKCKSNLDL KRHFKQLHER ERQKKLNRMR SLKGKKRQRF  60
KERFVSGNHR YNEAARSIIK PKVGYGLASE LRRAWVFVKT VEDKPQAADW ALKRQMQHSM  120
SRGIDWLFLV SDDSDFSDMM RKARVAKLGT VVVGDMDRAL GRHADVWVPW IGVENGEVSE  180
KDLVPRGSRS EFFDGEEDNG DELFSDFGFD GGGGLDNVVD ELVRNSQSSG LRISVFSEGE  240
LEGGERVEGD SDSDEYQFDS ENENSDEEDG FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.12e-99C2H2 family protein