PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012241.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 416aa    MW: 46599.1 Da    PI: 5.4169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012241.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.2e-9224132373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ++lL++cA+a++++d++laq++L+ l+++a +dgd++qRl+  f++AL ar ar    ++ +a++ s+++ + +++++++++l  f +++P+++f++ 
  PCP012241.1   2 EQLLVHCANAIETNDATLAQQILWVLNNIAPQDGDSNQRLTCAFLRALIARAARiGNCKVLAAMANSQANFTIHTHKFSVVELasFIDLTPWHRFGFT 99 
                  79****************************************************4445677777777777666888888888789************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....... 181
                  taN aIleaveg + vHi+D+++++++Q p+L +a+a R     +pp l++T+ g +e +      ++ee+g++L +fA++ ++ +ef+v+       
  PCP012241.1 100 TANAAILEAVEGYSVVHIVDLSLTHCMQIPTLVDAIARRHdgnVSPPLLKLTVAGTMEDVppmLDLSYEELGSKLVNFARSRNIILEFRVIpssytdg 197
                  ***************************************9655569**********998898888999***********************8885555 PP

         GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                   a+ +++l++++L   +  Eal+Vn++++lh++                          ++s s++s r+ +Lk +++l+P++vv+v++++d++s++ 
  PCP012241.1 198 FANLIQQLRVQNLVYTEsSEALVVNCHMMLHYISeealtlpatnpnpsssgstssygfdASSSSSSSLRTVFLKELRGLEPTIVVLVDEDVDLTSNNP 295
                  555555566666655559****************************************8888888889****************************** PP

         GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                  + r+ +a++y +  +d+l++ lpr s++r+++E+  + ++i+nv+a eg++r+er e + +W +r+++a F++v+++e+a+ ++k++l +++  g+ +
  PCP012241.1 296 VCRLRSAFNYLWIPYDTLDTFLPRGSKQRQWYEAD-VCWKIENVIAYEGFQRVERLEPKCRWVQRMRNANFRSVSFGEDAVLEVKAMLDEHA-TGWGL 391
                  ***********************************.99******************************************************.9999* PP

         GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                  + e++ +vl+Wk++++v+++aW
  PCP012241.1 392 KREEEDVVLTWKGHNVVFATAW 413
                  ********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MEQLLVHCAN AIETNDATLA QQILWVLNNI APQDGDSNQR LTCAFLRALI ARAARIGNCK  60
VLAAMANSQA NFTIHTHKFS VVELASFIDL TPWHRFGFTT ANAAILEAVE GYSVVHIVDL  120
SLTHCMQIPT LVDAIARRHD GNVSPPLLKL TVAGTMEDVP PMLDLSYEEL GSKLVNFARS  180
RNIILEFRVI PSSYTDGFAN LIQQLRVQNL VYTESSEALV VNCHMMLHYI SEEALTLPAT  240
NPNPSSSGST SSYGFDASSS SSSSLRTVFL KELRGLEPTI VVLVDEDVDL TSNNPVCRLR  300
SAFNYLWIPY DTLDTFLPRG SKQRQWYEAD VCWKIENVIA YEGFQRVERL EPKCRWVQRM  360
RNANFRSVSF GEDAVLEVKA MLDEHATGWG LKREEEDVVL TWKGHNVVFA TAWMPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-171GRAS family protein