PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012181.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 502aa MW: 56446.2 Da PI: 9.0257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012181.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H PCP012181.1 55 YICEICNQGFQRDQNLQMHRRRH 77 89********************9 PP
2	zf-C2H2	15.2	6e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PCP012181.1 132 WVCDKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MLPNNSSSLV PSSDPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYICEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRVRPESQ TLQPAACLSR TASSPSPSCS DNNFSRAPST WPPSKNLALP HPSPTEYTKL 240 ILRNPPDHAD HHQATLSKKN SSNAHYNLDL QLATTSNINI PINEVSVSSK REENHSTQLQ 300 LSIGSCEFGG GDRSHQNKTI EQHSNIMIAN RNYSSRGNEV KERERESSST TTNHHEHDDD 360 GQKPKPATVA AGILRLKEEA REQLRLAMAE KDYAEEARQQ AENHIKLAEK EFANAKRIRQ 420 QAQAELDKAH ALKEQAVKKV NSTILQITCH ACKKQFMQGA HEATTNQHSL VLSYMSSAIT 480 SDDHRLEKDI STRTHRAKSA SA

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MLPNNSSSLV PSSDPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYICEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRPESQ TLQPAACLSR TASSPSPSCS DNNFSRAPST WPPSKNLALP HPSPTEYTKL  240
ILRNPPDHAD HHQATLSKKN SSNAHYNLDL QLATTSNINI PINEVSVSSK REENHSTQLQ  300
LSIGSCEFGG GDRSHQNKTI EQHSNIMIAN RNYSSRGNEV KERERESSST TTNHHEHDDD  360
GQKPKPATVA AGILRLKEEA REQLRLAMAE KDYAEEARQQ AENHIKLAEK EFANAKRIRQ  420
QAQAELDKAH ALKEQAVKKV NSTILQITCH ACKKQFMQGA HEATTNQHSL VLSYMSSAIT  480
SDDHRLEKDI STRTHRAKSA SA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-123	C2H2 family protein