PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012159.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 356aa MW: 40760.8 Da PI: 9.6727

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012159.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ PCP012159.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899***************************.*********996 PP
2	Myb_DNA-binding	58.7	1.3e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ PCP012159.1 67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEDYGDEAKS TSCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPKINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS 120 KVCGKRNFQD FCNDHSPNTS SFSNNFDASR RLRSQGSSIG FDQNNISTKF FEFGNPNKDR 180 AMFMDSRPTS SSPYNWNFAS ISATSNNSSS SVDLLGRERR DYFNNGSSNY TITELSKGLH 240 PQFVHRRHNP SSSFLYGRYR GSSSNAFGRP TNNRVNVPSP FGCLNPADHH INRHDQHGST 300 FKIGLANLYE NASTLQKWKV AATTTKFDDH DPQDHESIDH NKETPFIDFL GVGISS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEDYGDEAKS TSCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPKINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS  120
KVCGKRNFQD FCNDHSPNTS SFSNNFDASR RLRSQGSSIG FDQNNISTKF FEFGNPNKDR  180
AMFMDSRPTS SSPYNWNFAS ISATSNNSSS SVDLLGRERR DYFNNGSSNY TITELSKGLH  240
PQFVHRRHNP SSSFLYGRYR GSSSNAFGRP TNNRVNVPSP FGCLNPADHH INRHDQHGST  300
FKIGLANLYE NASTLQKWKV AATTTKFDDH DPQDHESIDH NKETPFIDFL GVGISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	1e-61	MYB family protein