PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012071.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 1584aa MW: 176078 Da PI: 7.0266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012071.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.7e-15	63	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l PCP012071.1 63 KGGWTPQEDETLRVAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 109 688***************************.**********986 PP
2	Myb_DNA-binding	61	2.4e-19	115	161	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W++Ia+ ++ gR +kqc++rw+++l PCP012071.1 115 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 161 79****************************.***********97 PP
3	Myb_DNA-binding	54.6	2.4e-17	167	210	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++ PCP012071.1 167 KEAWTLEEELALMNAHQKHGNK-WAEIAKVLP-GRTDNAIKNHWNS 210 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1584 aa Download sequence
MAEAKLEECC LENKQSTAAS SSSVSQGSGS GSGSAIIKSP GACSPASASP TQRRTSGPIR 60 RAKGGWTPQE DETLRVAVAA FKGKSWKKIA EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ 120 EEDDKIIELV AKYGPTKWSL IAKSLPGRIG KQCRERWHNH LNPDIKKEAW TLEEELALMN 180 AHQKHGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKLEFYL ATGKLPPPPK YGTKETRTSA 240 TKNLLVCSTK GSDSTAQTSS GNADMSKLDE DGKDQFESAA PPQDMGASPS VHPNESADSE 300 GVECKLRLSF MDLSCSNSDS GPKFENFRVN RKPQIENSVI NSQAELENCV FNNQLDEDRV 360 KTTSVPVETP GYGSLYYEPP PPESCAQFDS GFSNMHHLQY DYTSSPNLSP ISFFTPPSAN 420 GSGLCNQSPE SILKIAAKTF PNTPSILRKR KTIGQEQLPG NKVAIVDHES GIVDCESVRE 480 QERHKNSAEV SGSQDGSSCE SPTNNGISTI GSNGKAFNAS PPYRLRARRT AVFKSVEKQL 540 EFTCDRGQRR AILLTLADTV ELIQVFLLGF SLTIGILWQL GNFLAVIGNF LVIGDCDSMG 600 DLIDVCWYTS SMESVEITAT LTDDAIEHVI GCKNAAEAWA NLEDRDQLIV AGEYISDTDV 660 MIAELASLPK EYATIRTVIL ARESTITMKE FKALLLGAER ENDVVLSSLT QNMAALYMHS 720 NNAGSSSHYS NGASSSNSFA SDPSCTGGVI TSSPLSQQGS FLSQFQMGHP AYFPDQNTLG 780 TNARFFGNID PLPDTFRQPQ SSSTFNGGQQ RDSLNLHQRL MEDNIEVSME DNREVSMEDN 840 QEVIVITGQG IKAKDLILTG VTMVGMDKVT REILYKGRSR PQELFQIPVS SWKAPSGFIG 900 QLVRSSLWHQ RLGHPTNEVL AVMLAKSNIP MSTANKHAMC TDCIHGKITR KHFSNDASRS 960 VLPFDKIHSN VWGPSFVQSI EGFRFYVVFV DDCTRYIWIF PLYNKSEVFS LFVKFYKYVE 1020 VQFGAHIKCL QSDGGGEFLS NHFKEFMQSK GMVHIISCPY TPQQNGFVER RHRHIVETTI 1080 TLMNATGLSQ EFWFHSCAHV VYLINRMARK ALHMNSPFFC LYDKHPSLQD LKVYGSAVYP 1140 YLRHYNDSKF QPRTSVCIFL GYASGYKGDI CYNLQTQKLI LSRHILHDES VFPAKCQSSI 1200 LLGSTNVQSS VHSSPIIVQL RVPNVHDSRR NETVQSISED TSILAASDNS SALFDSSQAP 1260 PNTQESEPLP SHSPTLVQDL HLPLLPVFDP SQLQQAMQDE FDALKEQGTW TLIPQPHDRT 1320 IIGSKWVYKL KKNLDGSISI YKARLVAQGY TQEHELDYSK TFSLVVRHTT VRLILALATS 1380 HKWELRQLDI KNAFLHGELQ EEIYMKQPQS FVEPKTPDYV CKLVKSLYGL KQAPRAWNSK 1440 FIGVLPSLGF IVSQADTSLF VKTDGNNIVI LLLYVDDIIP TGSNISKVQA VINALGEIFD 1500 LKDIGKLTYF LGLQIQYRAN GDMFISQAKY AKELIKKAGI ESSSDTQISA YSDADWAADI 1560 NTRRSIIGYV VYLGLNPTSW QSKK

Sequence ? help Back to Top

Protein Sequence Length: 1584 aa Download sequence

MAEAKLEECC LENKQSTAAS SSSVSQGSGS GSGSAIIKSP GACSPASASP TQRRTSGPIR  60
RAKGGWTPQE DETLRVAVAA FKGKSWKKIA EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ  120
EEDDKIIELV AKYGPTKWSL IAKSLPGRIG KQCRERWHNH LNPDIKKEAW TLEEELALMN  180
AHQKHGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKLEFYL ATGKLPPPPK YGTKETRTSA  240
TKNLLVCSTK GSDSTAQTSS GNADMSKLDE DGKDQFESAA PPQDMGASPS VHPNESADSE  300
GVECKLRLSF MDLSCSNSDS GPKFENFRVN RKPQIENSVI NSQAELENCV FNNQLDEDRV  360
KTTSVPVETP GYGSLYYEPP PPESCAQFDS GFSNMHHLQY DYTSSPNLSP ISFFTPPSAN  420
GSGLCNQSPE SILKIAAKTF PNTPSILRKR KTIGQEQLPG NKVAIVDHES GIVDCESVRE  480
QERHKNSAEV SGSQDGSSCE SPTNNGISTI GSNGKAFNAS PPYRLRARRT AVFKSVEKQL  540
EFTCDRGQRR AILLTLADTV ELIQVFLLGF SLTIGILWQL GNFLAVIGNF LVIGDCDSMG  600
DLIDVCWYTS SMESVEITAT LTDDAIEHVI GCKNAAEAWA NLEDRDQLIV AGEYISDTDV  660
MIAELASLPK EYATIRTVIL ARESTITMKE FKALLLGAER ENDVVLSSLT QNMAALYMHS  720
NNAGSSSHYS NGASSSNSFA SDPSCTGGVI TSSPLSQQGS FLSQFQMGHP AYFPDQNTLG  780
TNARFFGNID PLPDTFRQPQ SSSTFNGGQQ RDSLNLHQRL MEDNIEVSME DNREVSMEDN  840
QEVIVITGQG IKAKDLILTG VTMVGMDKVT REILYKGRSR PQELFQIPVS SWKAPSGFIG  900
QLVRSSLWHQ RLGHPTNEVL AVMLAKSNIP MSTANKHAMC TDCIHGKITR KHFSNDASRS  960
VLPFDKIHSN VWGPSFVQSI EGFRFYVVFV DDCTRYIWIF PLYNKSEVFS LFVKFYKYVE  1020
VQFGAHIKCL QSDGGGEFLS NHFKEFMQSK GMVHIISCPY TPQQNGFVER RHRHIVETTI  1080
TLMNATGLSQ EFWFHSCAHV VYLINRMARK ALHMNSPFFC LYDKHPSLQD LKVYGSAVYP  1140
YLRHYNDSKF QPRTSVCIFL GYASGYKGDI CYNLQTQKLI LSRHILHDES VFPAKCQSSI  1200
LLGSTNVQSS VHSSPIIVQL RVPNVHDSRR NETVQSISED TSILAASDNS SALFDSSQAP  1260
PNTQESEPLP SHSPTLVQDL HLPLLPVFDP SQLQQAMQDE FDALKEQGTW TLIPQPHDRT  1320
IIGSKWVYKL KKNLDGSISI YKARLVAQGY TQEHELDYSK TFSLVVRHTT VRLILALATS  1380
HKWELRQLDI KNAFLHGELQ EEIYMKQPQS FVEPKTPDYV CKLVKSLYGL KQAPRAWNSK  1440
FIGVLPSLGF IVSQADTSLF VKTDGNNIVI LLLYVDDIIP TGSNISKVQA VINALGEIFD  1500
LKDIGKLTYF LGLQIQYRAN GDMFISQAKY AKELIKKAGI ESSSDTQISA YSDADWAADI  1560
NTRRSIIGYV VYLGLNPTSW QSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-143	MYB family protein