PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012040.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 299aa    MW: 33572.6 Da    PI: 6.4183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
      PCP012040.1 15 KGPWTLEEDNLLIHYIANHGEGHWNSLAKFAGLKRTGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding52.71e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      PCP012040.1  68 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAAPRNPNEE HELRKGPWTL EEDNLLIHYI ANHGEGHWNS LAKFAGLKRT GKSCRLRWLN  60
YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKQARQL  120
NIESNSVQFL DAVRGFWMPI LLQKMKQSSC SSTLSPSQNS ASPSLSPNHT VPSVPLPTSP  180
PGNVTNMFDN YHMSGTSNLA TVPSNILSSE SLISQVPQMA EQSTSLYPAF DHIGYGGLSP  240
DGSYYVDSSS YDMEGLSLDP VSAMGNYDNS QFDCQMVGND WMLDTITDNL WNMDGIVTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-82MYB family protein