PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP011955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27000.7 Da PI: 6.5142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i n+ qvtfskRrng++KKA+EL++LC+ae+a+++fs+ k++ + PCP011955.1 15 KITNEASLQVTFSKRRNGLFKKASELCTLCGAEIALMVFSPGKKVFSF 62 58899999*********************************9999887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MARTSRGRQR VPMTKITNEA SLQVTFSKRR NGLFKKASEL CTLCGAEIAL MVFSPGKKVF 60 SFGHPCFETL IDRFEGRLSL AQLTMGHDMQ QMLEAYRNVS LNVLSQDLTK VMVLVDNEKK 120 LGVNISQTMK ESMSENWWER PLEEIETDRL EFLRTYMEEL GCKVNETRGK MLLPQVFETA 180 NDNNNFFVGS SCSNTADGPY DHMMQTHANQ PSSSTGGGLN ENTSTWPFSA WNPSLGGGFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-49 | M-type_MADS family protein |