PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011938.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 371aa MW: 41169.1 Da PI: 8.1944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011938.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+ +++L +H+ H PCP011938.1 130 FPCTACGEIFPKPETLDHHQAIH 152 89******************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MANISTLFNK FLSLLLLLLH LGCFSITATT NHQTKHHHRR KLLKPTTLKP QKALSTSWSY 60 LKRIFTSKSC KITCTNIIQS HLSTPPRSSS HSIVSLVLPD PDTKYPPGSF PESGISAGSH 120 QFFPLRNDIF PCTACGEIFP KPETLDHHQA IHHAVSELHD GDSGKNIVQI IFKTGWTDTR 180 KAPEIHRILK IHNSGKILSR FEEYRELVKS KAARNGACRR RDERCIADGN ELLRFHCSTF 240 VCDLGLNGNS GICNHEYCSI CGIIKSGFSP KLDGISTLSS SSRAHVAIPE DIEEDFKFMN 300 VKRAMLVCRV VAGRVGCDSE EDIDDVDKEG GGFDSVVGRG GSGVHSRVDE EELLVYNPRA 360 VLPCFVIIYT V

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MANISTLFNK FLSLLLLLLH LGCFSITATT NHQTKHHHRR KLLKPTTLKP QKALSTSWSY  60
LKRIFTSKSC KITCTNIIQS HLSTPPRSSS HSIVSLVLPD PDTKYPPGSF PESGISAGSH  120
QFFPLRNDIF PCTACGEIFP KPETLDHHQA IHHAVSELHD GDSGKNIVQI IFKTGWTDTR  180
KAPEIHRILK IHNSGKILSR FEEYRELVKS KAARNGACRR RDERCIADGN ELLRFHCSTF  240
VCDLGLNGNS GICNHEYCSI CGIIKSGFSP KLDGISTLSS SSRAHVAIPE DIEEDFKFMN  300
VKRAMLVCRV VAGRVGCDSE EDIDDVDKEG GGFDSVVGRG GSGVHSRVDE EELLVYNPRA  360
VLPCFVIIYT V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-107	C2H2 family protein