PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011723.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 1039aa MW: 117333 Da PI: 6.525

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011723.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	497	542	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+ Ed+ l+ v++ G ++W Ia +g++Rt+ qc r+q PCP011723.1 497 RKSWTAKEDKNLLYFVQEKGINNWFDIAVSLGTNRTPFQCLARYQR 542 789*****************************************96 PP
2	Myb_DNA-binding	43.2	9.1e-14	551	594	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG g+W ++a+ +g gR + qc +rw k PCP011723.1 551 REWTKDEDARLRSAVETLGEGNWQAVASALG-GRAGTQCSNRWKK 594 68***************************.*********98 PP
3	Myb_DNA-binding	44.6	3.2e-14	604	647	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + PCP011723.1 604 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQSQCRDRYVN 647 8****************************.*********77 PP
4	Myb_DNA-binding	40.5	6.4e-13	656	695	2	43
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 g WT+eEd +l a++++G W+++a++++ +Rt+++c r PCP011723.1 656 GEWTEEEDSRLRAAIEEHGYC-WSKVAACVP-RRTDNMCWRR 695 68***************99.*****.*****666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence
MSPPSDDDQD QFSVDEEEED DDLFEADMEA LRRACMLTGT SPDDLKNDGG GGNDDERQTS 60 ADSESDSDAD DDDLELLRQI RSRFSNSSDA CEPLSLKPLC TLPPDASGDE EDDYQTLLAI 120 RKRFSAYGNA TLGFGTLEYD FMDSSAEIDS FEVGFVASIA MVLFGLMPQR KWCFIRSLSY 180 ICMIELELNR VPESLSGFDD TLENDTKQVG SCCKSVKETC DEISAIRNDA LERFPDPEDA 240 DLATNPLSDN AEGQSSALIV WNQSDSCSTS MLPRKDSSFP KAAQVFMDAI KKNRASQKFI 300 RNKLIQIEAK IEENRKLKER VKILKDFQVS CKRRTWESLS QKKDPRVQLI LPKGPRVSRD 360 SKVHDKKISA LLYGPEENSH VANYRMTMKK YLDSLYRKKW SQVEREALEK GIKQQFQEMV 420 LQSSVDESSF SERPCGESNH IDDILASIKS LEITPEMFRE FLPKVKWEQL ASMYLPGRSG 480 AECETRWLNW EDPLINRKSW TAKEDKNLLY FVQEKGINNW FDIAVSLGTN RTPFQCLARY 540 QRSLNASILK REWTKDEDAR LRSAVETLGE GNWQAVASAL GGRAGTQCSN RWKKSLHPTK 600 KREGRWTPEE DKRLKVAQML FGPKNWNKTA QFVPGRTQSQ CRDRYVNSLE PSLNYGEWTE 660 EEDSRLRAAI EEHGYCWSKV AACVPRRTDN MCWRRCKVLY PEEVLLLKEQ KKIKKVALMC 720 NFVDREEERP ALGPNDFLPP IDTTTKTLTY PKKQNGKLSK VPNKTRPRRN KNNSESCSDA 780 HGIDNSHQVE TSNGHDVPNK KNNVRKQPRR RRKSTEPTEG QVIVPVPYEH VTHKEEQRET 840 SCSDQIVGTS DGDDTTLAVF QRNKSKKRNL GPPSNDTRKK RKLAVSDCSV QDSTANNIQK 900 GAGSHPEAAI MVCESEQGGL KLDSEPNVAF QEPVIKVAGV SPKSDHDVDD VLASLGKKKS 960 KKRRPQTSKS SPQACPPSSA TMKSESFPKG VGLGEGEGLD HCEPVSETGN NGAEGDHEDG 1020 YMTLACFLRN KSKRRRQCG

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence

MSPPSDDDQD QFSVDEEEED DDLFEADMEA LRRACMLTGT SPDDLKNDGG GGNDDERQTS  60
ADSESDSDAD DDDLELLRQI RSRFSNSSDA CEPLSLKPLC TLPPDASGDE EDDYQTLLAI  120
RKRFSAYGNA TLGFGTLEYD FMDSSAEIDS FEVGFVASIA MVLFGLMPQR KWCFIRSLSY  180
ICMIELELNR VPESLSGFDD TLENDTKQVG SCCKSVKETC DEISAIRNDA LERFPDPEDA  240
DLATNPLSDN AEGQSSALIV WNQSDSCSTS MLPRKDSSFP KAAQVFMDAI KKNRASQKFI  300
RNKLIQIEAK IEENRKLKER VKILKDFQVS CKRRTWESLS QKKDPRVQLI LPKGPRVSRD  360
SKVHDKKISA LLYGPEENSH VANYRMTMKK YLDSLYRKKW SQVEREALEK GIKQQFQEMV  420
LQSSVDESSF SERPCGESNH IDDILASIKS LEITPEMFRE FLPKVKWEQL ASMYLPGRSG  480
AECETRWLNW EDPLINRKSW TAKEDKNLLY FVQEKGINNW FDIAVSLGTN RTPFQCLARY  540
QRSLNASILK REWTKDEDAR LRSAVETLGE GNWQAVASAL GGRAGTQCSN RWKKSLHPTK  600
KREGRWTPEE DKRLKVAQML FGPKNWNKTA QFVPGRTQSQ CRDRYVNSLE PSLNYGEWTE  660
EEDSRLRAAI EEHGYCWSKV AACVPRRTDN MCWRRCKVLY PEEVLLLKEQ KKIKKVALMC  720
NFVDREEERP ALGPNDFLPP IDTTTKTLTY PKKQNGKLSK VPNKTRPRRN KNNSESCSDA  780
HGIDNSHQVE TSNGHDVPNK KNNVRKQPRR RRKSTEPTEG QVIVPVPYEH VTHKEEQRET  840
SCSDQIVGTS DGDDTTLAVF QRNKSKKRNL GPPSNDTRKK RKLAVSDCSV QDSTANNIQK  900
GAGSHPEAAI MVCESEQGGL KLDSEPNVAF QEPVIKVAGV SPKSDHDVDD VLASLGKKKS  960
KKRRPQTSKS SPQACPPSSA TMKSESFPKG VGLGEGEGLD HCEPVSETGN NGAEGDHEDG  1020
YMTLACFLRN KSKRRRQCG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	866	882	KKRNLGPPSNDTRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-178	MYB family protein