PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011715.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 481aa    MW: 54158.3 Da    PI: 6.1177
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011715.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS140.22.1e-431663041142
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L++cA+a+s+ ++ +a +l++ l +++s +g+pmqRl ay++e+L+arl +s+s++yk+l+++  +   ss+ ++++++++ ++P+ +f++l a
  PCP011715.1 166 LKNVLIDCARAISETEFDNAISLMEVLGQMVSVSGEPMQRLGAYMLEGLRARLEGSGSSIYKTLKCEVPT---SSQLMSYMSVLYRICPYWRFAYLSA 260
                  5789*****************************************************************9...999999******************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppsl 142
                  N  I ea+e+e r+HiiDf+i qG QW++L+q La++p+gpp++
  PCP011715.1 261 NVVIREALENEPRIHIIDFQIAQGSQWIPLIQDLACQPGGPPTI 304
                  ******************************************87 PP
2GRAS207.38.4e-64304481196374
         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEa+aVn+ + lh+++desvs+e++rd++L+lvkslsPkv+++veqe+++n+++F  rf+e ++yy+a+f+s+++  pr+++eri+ E ++++r+
  PCP011715.1 304 IQPGEAIAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFYSRFVEMVDYYTAMFESIDVARPRDDKERISAEMHCVARD 401
                  689*********************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vacegaer+erhe ++kWr+rl + GF+p+pls k+++  + ll++++++ +r++e +g+l+l W++r++ + SaWr
  PCP011715.1 402 IVNMVACEGAERVERHELFGKWRSRLVMDGFTPYPLSPKVTEASRVLLKEYHGN-FRIQEANGALYLSWMQRAMATSSAWR 481
                  ****************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MKASQQHRGV ALYHQPVQQI DRCGFQILEN SMYPDTGSQG NNLSFQNYKD DKEQFFTLDS  60
SPATAFLTCD SPSAISGLSN RSPFSPQGSH SCFSDQHHSS GNNYGSPISG CSIIVDDDFK  120
SKLREMEVSL LGPDSDIVDS HFCSHRSGMA RWSHSQIAET IPKLNLKNVL IDCARAISET  180
EFDNAISLME VLGQMVSVSG EPMQRLGAYM LEGLRARLEG SGSSIYKTLK CEVPTSSQLM  240
SYMSVLYRIC PYWRFAYLSA NVVIREALEN EPRIHIIDFQ IAQGSQWIPL IQDLACQPGG  300
PPTIQPGEAI AVNFPYVLHH MPDESVSTEN HRDRLLRLVK SLSPKVMTLV EQESNTNTSP  360
FYSRFVEMVD YYTAMFESID VARPRDDKER ISAEMHCVAR DIVNMVACEG AERVERHELF  420
GKWRSRLVMD GFTPYPLSPK VTEASRVLLK EYHGNFRIQE ANGALYLSWM QRAMATSSAW  480
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein