PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011538.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 606aa MW: 65706.4 Da PI: 8.2705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011538.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	539	561	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H PCP011538.1 539 VCPQCGAKFSSVTTLVDHVEKvH 561 6*****************99888 PP
2	zf-C2H2	14.6	9.6e-05	579	600	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H PCP011538.1 579 CPKCSKGFRDPVALVEHVERdH 600 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MAPQKNELIL FIIITLPSFV LCYSSLHENQ LIDKNVDEAS EFDSKAYPSY LNTIDDGSDL 60 FKGLIKESAD VLCLRSFDKV DSSTSSSAET VSVYDFGAEG DGETDDTKAF EKAWKVACSS 120 KEAVLVVPKK TYRIKPIRFS GPCKSQLIVQ ILGTLIASDD RSDFSKDGRH WLIFDSVSNL 180 VVEGGGAING NGKNWWQNSC KTDKSKPCKD APTALTFYKC KNLMVRNLKI QDAQQIHVSF 240 QKCMNVEVSN LSITAPEKSP NTDGIHVTDT QNILITSCVT ATGDDCLSIV NGSKLVQASN 300 ITCGSGHGIS IGSLGSGNST AYVSDITVNG AKLYGTTNGV RIKTWQVFCL EHRSYIKHNC 360 PKGDRKNVTV VICPLCAKGV HLIPDEDPNI TWERHVNTGC DPSNYEKATK KKKCPVPGCK 420 EILTFSNTIK CRDCTVDHCL KHRFGLDHKC PGPKKPEAGF PFLGYLSRSR KEVSKPNHAP 480 AASSPNWSSF LTAASSFRAS AEASVAKLSS ELSQKWQIAK DGTGQSSSSS GSRNGQGEVC 540 PQCGAKFSSV TTLVDHVEKV HEKGGNRAAA VKKVTIDACP KCSKGFRDPV ALVEHVERDH 600 GGTSRA

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MAPQKNELIL FIIITLPSFV LCYSSLHENQ LIDKNVDEAS EFDSKAYPSY LNTIDDGSDL  60
FKGLIKESAD VLCLRSFDKV DSSTSSSAET VSVYDFGAEG DGETDDTKAF EKAWKVACSS  120
KEAVLVVPKK TYRIKPIRFS GPCKSQLIVQ ILGTLIASDD RSDFSKDGRH WLIFDSVSNL  180
VVEGGGAING NGKNWWQNSC KTDKSKPCKD APTALTFYKC KNLMVRNLKI QDAQQIHVSF  240
QKCMNVEVSN LSITAPEKSP NTDGIHVTDT QNILITSCVT ATGDDCLSIV NGSKLVQASN  300
ITCGSGHGIS IGSLGSGNST AYVSDITVNG AKLYGTTNGV RIKTWQVFCL EHRSYIKHNC  360
PKGDRKNVTV VICPLCAKGV HLIPDEDPNI TWERHVNTGC DPSNYEKATK KKKCPVPGCK  420
EILTFSNTIK CRDCTVDHCL KHRFGLDHKC PGPKKPEAGF PFLGYLSRSR KEVSKPNHAP  480
AASSPNWSSF LTAASSFRAS AEASVAKLSS ELSQKWQIAK DGTGQSSSSS GSRNGQGEVC  540
PQCGAKFSSV TTLVDHVEKV HEKGGNRAAA VKKVTIDACP KCSKGFRDPV ALVEHVERDH  600
GGTSRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-101	C2H2 family protein