PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011510.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 502aa MW: 54343.2 Da PI: 7.5899

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011510.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2e-24	124	168	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PCP011510.1 124 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 168 79****************************************985 PP
2	QLQ	58.6	1.8e-20	59	95	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k PCP011510.1 59 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPLKK 95 59*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MLSFSNNKSE VSFLSKDGDF AYYQRNPSAI LSPYPRNAGS PGYGSLNLSM HGPLTGARGP 60 FTPSQWIELE HQALIYKYMT SNVPVPSNLL IPLKKPLYPY GLSGPSNPTS TWGAYHLGFS 120 GNNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHINRGRH RSRKPVEGQP GQAVSGTSNS 180 KRVPMNSSMS TSVMASNGAS NSVTTMPQQF KSLQPAVAAN PSSADAFVNR MQDPRGLSVM 240 SAPSLKPKSN NSTSKIGKQE FVAEESSQSE FGIVSTDSLL NPSHRNSYIS KDFGGSFLDF 300 TDQETQDQHP LRQFMDDWPK DQSSHSVSTW PEEIKSDWTQ LSMSIPMASS EFSSSPSSPT 360 HEKLVLSPLR LSREFVPAQM NLGMSNDLSE SSQEQTNWIP IPWGNSMGGP LGEVITNTTS 420 SGKICNNSTS PLDLLNDGWD GNSQLGSSPT GVLQKSTFCS LSNSSSGSSP RGGEIKKSSL 480 DGASIYDDVL GSTFASSSVP SL

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MLSFSNNKSE VSFLSKDGDF AYYQRNPSAI LSPYPRNAGS PGYGSLNLSM HGPLTGARGP  60
FTPSQWIELE HQALIYKYMT SNVPVPSNLL IPLKKPLYPY GLSGPSNPTS TWGAYHLGFS  120
GNNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHINRGRH RSRKPVEGQP GQAVSGTSNS  180
KRVPMNSSMS TSVMASNGAS NSVTTMPQQF KSLQPAVAAN PSSADAFVNR MQDPRGLSVM  240
SAPSLKPKSN NSTSKIGKQE FVAEESSQSE FGIVSTDSLL NPSHRNSYIS KDFGGSFLDF  300
TDQETQDQHP LRQFMDDWPK DQSSHSVSTW PEEIKSDWTQ LSMSIPMASS EFSSSPSSPT  360
HEKLVLSPLR LSREFVPAQM NLGMSNDLSE SSQEQTNWIP IPWGNSMGGP LGEVITNTTS  420
SGKICNNSTS PLDLLNDGWD GNSQLGSSPT GVLQKSTFCS LSNSSSGSSP RGGEIKKSSL  480
DGASIYDDVL GSTFASSSVP SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-94	GRF family protein