PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011499.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 379aa MW: 42352.8 Da PI: 6.4326

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011499.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.1e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W t ++++g++R++k+c++rw++yl PCP011499.1 14 KGPWSPEEDATLKAYIEKHGTGgNWITLPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.9	2.1e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PCP011499.1 69 GGFSEEEDNIICSLYMSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE KHGTGGNWIT LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKQQEAQQS RRAAIFKQEM IKRSENNANF INISAGFFNQ NPYNWPELPV VPVANYQTHD 180 LQLMQDEASI KTMLINLGGR FSHDSDTSTT SFQYPVDISS TSSSDHQYYQ SSIDVLASTS 240 AANSNNYSQF PSTNFDASNG TGGSSSPTIF HGLDNQNNNL QADHLHQLTE LEVYDNSFAH 300 QHQQLGGFYY QASEETLNNG SSAGTSTASA ESEISWGDIN SLVYGTQMVA DYETCCQQAV 360 VVPQDQHSFF AEATYFGLK

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKAYIE KHGTGGNWIT LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKQQEAQQS RRAAIFKQEM IKRSENNANF INISAGFFNQ NPYNWPELPV VPVANYQTHD  180
LQLMQDEASI KTMLINLGGR FSHDSDTSTT SFQYPVDISS TSSSDHQYYQ SSIDVLASTS  240
AANSNNYSQF PSTNFDASNG TGGSSSPTIF HGLDNQNNNL QADHLHQLTE LEVYDNSFAH  300
QHQQLGGFYY QASEETLNNG SSAGTSTASA ESEISWGDIN SLVYGTQMVA DYETCCQQAV  360
VVPQDQHSFF AEATYFGLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-75	MYB family protein