PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011403.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 401aa MW: 43590.4 Da PI: 8.2621

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011403.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	119	164	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W+ Ia+++ gR++k+c++rw++ PCP011403.1 119 RGHWRPAEDSKLKELVGQYGPQNWNVIAEHLD-GRSGKSCRLRWFNQ 164 899***************************.*********996 PP
2	Myb_DNA-binding	58	2.1e-18	171	214	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ PCP011403.1 171 RGAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 214 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MAFRHLMSDC DGFTRYQDLN FLPPPPVSNQ LSLSNIFGGS TSAMGVVPFS PSSSQQTNKP 60 WSFQALENGG PKNISDLGVL SGVDQKRPTP LNLNLVGEED DDEGRSPAGG RTSAKRCVRG 120 HWRPAEDSKL KELVGQYGPQ NWNVIAEHLD GRSGKSCRLR WFNQLDPRIN RGAFSEEEEE 180 RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARSR REQSHVFKRR KPSSPPPPSP 240 LPHVVANFPK NPSTSTESTV SISTINDDST QSASTCTNLS LTPSNKPPPT FFSKFHPFHR 300 PQIIGSPIGS SSSSDGGFNK MIGSNGNGFC ESTGPVRGVG AAAAAMKGVD NSGHQSDSEI 360 SGDESVTTTS TNRSLSGEDQ DLHHEKTTTI HFIDFLGVGT A

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MAFRHLMSDC DGFTRYQDLN FLPPPPVSNQ LSLSNIFGGS TSAMGVVPFS PSSSQQTNKP  60
WSFQALENGG PKNISDLGVL SGVDQKRPTP LNLNLVGEED DDEGRSPAGG RTSAKRCVRG  120
HWRPAEDSKL KELVGQYGPQ NWNVIAEHLD GRSGKSCRLR WFNQLDPRIN RGAFSEEEEE  180
RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARSR REQSHVFKRR KPSSPPPPSP  240
LPHVVANFPK NPSTSTESTV SISTINDDST QSASTCTNLS LTPSNKPPPT FFSKFHPFHR  300
PQIIGSPIGS SSSSDGGFNK MIGSNGNGFC ESTGPVRGVG AAAAAMKGVD NSGHQSDSEI  360
SGDESVTTTS TNRSLSGEDQ DLHHEKTTTI HFIDFLGVGT A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	3e-64	MYB family protein