PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011021.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 417aa MW: 46488.2 Da PI: 8.5367

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23	2e-07	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H PCP011021.1 238 HYCQICGKGFKRDANLRMHMRAH 260 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MISGAPSNCF QTMLQQQQHH LGLQIYEDPD QVSSFSLEPN SSSSSVPDNH STSLLCNVSV 60 LKEKVHQAKS LVSILISPNH HQSQPQESAT ITLASMSNII QEIIVTASSM MFTCQQMALV 120 STTTPGNHIN NTNTSTTTTG QGLSNPSDHR DHNRLSETNF GGGHGNKIDQ SGFYSTREHT 180 LDWFSDSYND CTTADPSTRI VNQRGNNDKH VQGKELPVSS NYDIIEVDAS DLLAKYTHYC 240 QICGKGFKRD ANLRMHMRAH GDEYKTIVAL SNPMKKTNNN NDSAGGIDGN MACSTKLPRK 300 YSCPQEGCRW NQKHAKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKQFS VLSDLRTHEK 360 HCGDLRWQCS CGTTFSRKDK LMGHVALFTG HTPVMITSLT RIGKVDQQSH GSQMQMG

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MISGAPSNCF QTMLQQQQHH LGLQIYEDPD QVSSFSLEPN SSSSSVPDNH STSLLCNVSV  60
LKEKVHQAKS LVSILISPNH HQSQPQESAT ITLASMSNII QEIIVTASSM MFTCQQMALV  120
STTTPGNHIN NTNTSTTTTG QGLSNPSDHR DHNRLSETNF GGGHGNKIDQ SGFYSTREHT  180
LDWFSDSYND CTTADPSTRI VNQRGNNDKH VQGKELPVSS NYDIIEVDAS DLLAKYTHYC  240
QICGKGFKRD ANLRMHMRAH GDEYKTIVAL SNPMKKTNNN NDSAGGIDGN MACSTKLPRK  300
YSCPQEGCRW NQKHAKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKQFS VLSDLRTHEK  360
HCGDLRWQCS CGTTFSRKDK LMGHVALFTG HTPVMITSLT RIGKVDQQSH GSQMQMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-108	C2H2 family protein