PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP010797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40296.9 Da PI: 6.6111 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g + R++k+c++rw +yl PCP010797.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGhgLQRCGKSCRLRWINYL 63 788*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.8e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ PCP010797.1 69 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 113 89********************.*********.************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGHGLQR CGKSCRLRWI 60 NYLRPDIRRG RFTPEEEKLI ISLHGVVGNR WAHIASHLPG RTDNEIKNYW NSWIKKKIRK 120 PSTPSSATTI SPPPSVDHHQ HIIPQLGNYN NQLDFAHQDL STTIKPQAQE TLFSSTCPMF 180 MFDTSTTANI EAAPDSYNAR GEIFQDMIVT TGLNSSEPWN LNQHQVQAFP PPVTMSFNTT 240 SSSTNNITMN TNYLPPLIEN MDNMVPNVDH HHHHHHHQSC NNIDEEGNHD QIALECLMQR 300 QELNEWVVSQ QQCSSFLFWD SVVDDQATVL AGQDHGIAHP TSSNAVQLSS FPPSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63910.1 | 2e-93 | MYB family protein |