PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010679.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 472aa MW: 53267.1 Da PI: 6.5723

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010679.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95	7e-30	343	435	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ + + k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql PCP010679.1 343 RWPRDEVLALINLRCSLFNNGGGSDqdkdggvvMKAPLWERISQGMLEMGYTRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 435 8************999998865445677888*****************************************8.9999******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MGGSRNLAEL GFKRSAEKCK EKFEEESRYF NNINFTKNYS FLSDLEQLCQ GGGDAHQQNA 60 DDHHRNPADH QEAPEDKNNE KEKVEKPSDE GDHQDSTRNE TIVGDSIGVI STEPLNPEEH 120 NEKEVVVETR PKNNTKKRKR QRKFEMLKGF CEDIVNRMMA RQEAMHNKLL EEMVKRNEEK 180 LAREEAWKKQ ETDRLNKELE IMAREQAVAG DRQATVIKFL KKFTSSSSNS STSTSSFPIQ 240 AQNPNRPTCH DVSGRKELDH HQEKENNPTT PSSLTESTLA PQSPSSSTLA PTPIAVPTMT 300 ILSRAAAAAA VVVAPPENSS DDVIINTQNP SSISHDKQDL GKRWPRDEVL ALINLRCSLF 360 NNGGGSDQDK DGGVVMKAPL WERISQGMLE MGYTRSAKRC KEKWENINKY FRKTKDVNKK 420 RSLDSRTCPY FHQLSSLYNQ GILVLPSDHA PEDRPASPEN HSLGDDDSTK HD

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MGGSRNLAEL GFKRSAEKCK EKFEEESRYF NNINFTKNYS FLSDLEQLCQ GGGDAHQQNA  60
DDHHRNPADH QEAPEDKNNE KEKVEKPSDE GDHQDSTRNE TIVGDSIGVI STEPLNPEEH  120
NEKEVVVETR PKNNTKKRKR QRKFEMLKGF CEDIVNRMMA RQEAMHNKLL EEMVKRNEEK  180
LAREEAWKKQ ETDRLNKELE IMAREQAVAG DRQATVIKFL KKFTSSSSNS STSTSSFPIQ  240
AQNPNRPTCH DVSGRKELDH HQEKENNPTT PSSLTESTLA PQSPSSSTLA PTPIAVPTMT  300
ILSRAAAAAA VVVAPPENSS DDVIINTQNP SSISHDKQDL GKRWPRDEVL ALINLRCSLF  360
NNGGGSDQDK DGGVVMKAPL WERISQGMLE MGYTRSAKRC KEKWENINKY FRKTKDVNKK  420
RSLDSRTCPY FHQLSSLYNQ GILVLPSDHA PEDRPASPEN HSLGDDDSTK HD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	PKNNTKKRK
2	137	142	KRKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	7e-79	Trihelix family protein