PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010584.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 269aa MW: 30087 Da PI: 9.9506

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010584.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	40	61	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg++F++ L Hi+ H PCP010584.1 40 TCSECGMRFRNGQALGGHISIH 61 6**************9999988 PP
2	zf-C2H2	15	6.9e-05	94	115	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ +L H+ +H PCP010584.1 94 SCQVCNKTFPSMKSLCGHMGSH 115 7******************887 PP
3	zf-C2H2	14.6	9.3e-05	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H PCP010584.1 166 HVCPICFKTFPTGQALGGHKRSH 188 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MKTFQRKLLG EYLNGADDTK GKELVLYNGH KTQAVDRSRT CSECGMRFRN GQALGGHISI 60 HFQRHLGPKN NKKFKVKQQQ LLLEYPSWNN SRLSCQVCNK TFPSMKSLCG HMGSHRQRAQ 120 SPPPSSSLSS ADQYSDGDSY IDSASKHYKY PKSKKRKFLD GYKGHHVCPI CFKTFPTGQA 180 LGGHKRSHYY KGEPVLKATG AAKNKVASTD GHEDSAKIKV ASADDREDCV IIDPGSQYWT 240 DKTIHVASRR ILLDLDLNKP PKEGDDVSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	1e-11	C2H2 family protein